Gene-based SNP discovery in tepary bean (Phaseolus acutifolius) and common bean (P. vulgaris) for diversity analysis and comparative mapping

Table 1 Common and tepary bean genotypes and SNP statistics

Genotype	Market class	Race	Total reads	Total uniquely mapped reads	# of Pv0.9 scaffolds mapped to	Total SNPs	Average read depth
CDC WM-2	Pinto	Mesoamerican	1007453	783163	2287	52640	18.6
Expresso	Black	Mesoamerican	613558	389281	1687	43308	10.2
Higuera-E	Yellow	Andean	568091	477595	1755	9516	13.8
SMARC1N-PN1	Navy	Mesoamerican	517863	442403	1760	45076	9.9
Jalo-EEP-558	Red	Andean	623709	475570	2227	9550	11.9
BAT 93	Black	Mesoamerican	509572	323613	1889	37938	9.4
W6 15578		P. acutifolius spp. acutifolius	556903	355707	1939	164162	12.6
PI 430219		P. acutifolius spp. tenuifolius	590067	438042	1928	171524	16.4

ISSN: 1471-2164