Skip to main content
Fig. 6 | BMC Genomics

Fig. 6

From: Comparative genomic analyses reveal broad diversity in botulinum-toxin-producing Clostridia

Fig. 6

Group II core genome phylogeny. Core genome phylogeny of C. botulinum Group II inferred with RAxML v8.1.1 [63] using the ASC_GTRGAMMA model on an alignment of 197,688 core genome SNPs produced with NASP [61] using C. botulinum Eklund 17B [GenBank:CP001056, CP001057] as a reference genome. The consistency index is 0.81, and the retention index is 0.90. Gray circles indicate bootstrap values over 95 %. The phylogeny was rooted with the clade that includes strains Eklund 202F, KAPB-3, Eklund 17B and CDC 66177 using FigTree [55]. Strains are color-coded by botulinum neurotoxin serotype

Back to article page