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Table 4 Genomic regions associated with the monounsaturated fatty acids profile in the Longissimus thoracis of Nellore

From: Genome-wide association between single nucleotide polymorphisms with beef fatty acid profile in Nellore cattle using the single step procedure

Trait

QTL window

% Variance explained SNP windowa

PCGb

Total MUFA

4:31045067-31056443

1.27

RAPGEF5

4:10646197-10655217

1.10

CALCR MIR653 MIR489

15:23027848-23042930

1.77

-c

15:77580057-77608737

1.67

CKAP5

17:19998159-20045296

1.43

-

C14:1

6:20782674-20793003

1.75

ARHGEF38

 

3: 93656044-93678760

2.12

SLC1A7

 

3: 106397884-106406683

1.64

COL9A2

C16:1

5: 112777768-112833555

1.73

MIR1281

 

5: 114505769-114536452

1.22

TTLL1

 

6: 88311624-88350890

1.79

SLC4A4

 

12: 1698087-1733249

3.27

TDRD3

 

14: 45588151-45625166

1.12

-

 

18: 1131250-1147435

1.35

-

 

22:22372870-22388066

1.08

-

 

28: 34505791-34523077

1.04

-

C18:1 cis-9

3:6449321-6472465

1.29

 

3:60472950-60520103

1.28

 

4:2070739-2116544

1.12

-

7:85322486-85362698

1.11

XRCC4

8:101007779-101024030

1.40

PALM2

12:21265917-21282993

2.15

WDFY2 DHRS12

23:44473841-44501022

10.59

ADTRP

C18:1 trans-9

4:8337794-8361230

12.00

CDK14

8:68605036-68625678

1.29

-

9:78101823-78132552

1.87

-

12:61362119-61385432

1.12

-

18:56273509-56313047

1.45

CD37 TEAD2 DKKL1 CCDC155

24:56810309-56821447

1.36

WDR7

C18:1 trans-11

2: 59116358-59143632

1.78

-

4: 55957454-55984897

1.23

-

5: 99332464-99343514

1.06

YBX3

6: 1976981-2001221

1.30

MARCH1

10: 39459983-39493584

2.34

-

10: 88628112-88637230

1.26

ESRRB

14: 84372868-84383110

1.33

SNTB1

26: 46130255-46142795

3.16

ADAM12

  1. aWindow that consists of continuous 10 SNPs
  2. bPositional/putative candidate gene
  3. cNo PCG associated with the trait