Table 2 Novel or candidate miRNAs found in pear buda
Name | miRNA _sequence | Length | Contig | miRNA* sequence | Pipeline usedb |
|---|---|---|---|---|---|
miRn1 | TGCGTTTGCACCTGCACCTCT | 21 | scaffold303.0 | AAGGTGCAGGTGTAACTGCAG | miRCAT |
miRn2 | CGAAGACCTTGGGGAGAGTGG | 21 | scaffold1160.0 | ACTCTCCCTCAAGGGCTTCGA | miRCAT |
miRn3 | AAGCGGAGTAATGGTTACTGA | 21 | scaffold276.0 | AGAGCTGCATTATTCTCTTGT | ShortStack |
miRn4 | TCACCTTGTAAAAAATTGGCC | 21 | scaffold266.0 | CAATTTTTTATAAGGTGAAT | ShortStack |
miRn5 | TCGGGACAGCGTACTTGAGTT | 21 | scaffold230.0 | CTCACGCGCGCTGTCCCGAGA | ShortStack |
miRn6 | TTGAGGATGCATAGTTTTCAG | 21 | scaffold266.0 | GAAAATAATGCATCTTCAACG | ShortStack, miRCAT |
miRn7 | GTGTAACCGTCGTAATGTCCC | 21 | scaffold198.0 | GACATTACAACGGCCACACGG | ShortStack |
miRn8 | CTGCCAAAGGAGATCTGCTCAG | 22 | scaffold1.0 | GAGCAGTCTCCTCTTGGCAAAC | ShortStack,miRCAT |
miRn9 | TCCCTAAAACCACCAAGGCCAA | 22 | scaffold2.0 | GGCTTTAGTGGGTTAGGAAGA | ShortStack |
miRn10 | GCGTACGAGGAGCCAAGCATA | 21 | scaffold32.0 | TGCCTGGCTCCCTGTATGCCA | miRCAT |
miRn11 | AATAATTGTAGTCGTTGGATCA | 22 | scaffold371.0 | TTTGATCTAACGGCTACAAACA | miRCAT |
miRn12 | TGGTGTTTGGATGGACGTGTT | 21 | scaffold862.0 | TAAGTTCATCCAAACACCATA | ShortStack |
miRn13 | AGGTGCAGGTGTAACTGCAGA | 21 | scaffold303.0 | TGCGTTTGCACCTGCACCTCT | ShortStack |
miRn14 | ACCTAGCTCTGATACCATAAA | 21 | scaffold3.0 | TGTGGTATCAGGACTATGTTA | ShortStack |
miRn15 | GGTTTGAGTGGATTGGGAAGA | 21 | scaffold2.0 | TTCTTAAAACCACTCAAGCCAA | ShortStack, miRCAT |
miRn16 | TTCTTGACCACCGACGCCGACA | 22 | scaffold131.0 | TTGGCGTCGTGGTCAAGAAGG | ShortStack |
miRn17 | AAAACCGCGGATTGGGGCGTG | 21 | scaffold17.0 | NO | miRCAT |
miRn18 | AAGAGATATGGACCGTTGGATA | 22 | scaffold1.0 | NO | miRCAT |
miRn19 | AATGACGTGTGGCATATCATC | 21 | scaffold28.0 | NO | miRCAT |
miRn20 | ACACGATGTATGATGAACGG | 20 | scaffold1044.0 | NO | miRCAT |
miRn21 | ACCTGATTGGTTGCTGTTGGAT | 22 | scaffold89.0 | NO | miRCAT |
miRn22 | ACTTTGGGATGTGGCAATGTGA | 22 | scaffold285.0 | NO | miRCAT |
miRn23 | AGGAGACGAAGAAACTGGTGC | 21 | scaffold463.0 | NO | miRCAT |
miRn24 | AGGAGAGGGAGGTGGGTCGGG | 21 | scaffold6.0 | NO | miRCAT |
miRn25 | AGGATGAGCTGAAGATGATAA | 21 | scaffold1.0 | NO | miRCAT |
miRn26 | CAAAGTTTTTGGAATGTTGCA | 21 | scaffold54.2 | NO | miRCAT |
miRn27 | CCGAACTTGGTGGATTAGGAG | 21 | scaffold1.0 | NO | miRCAT |
miRn28 | CCGGATTTCGTGGTCAGGAGG | 21 | scaffold124.0 | NO | miRCAT |
miRn29 | CCTGACTGTTGATGCATGTAGG | 22 | scaffold373.0 | NO | miRCAT |
miRn30 | CCTTGTTTAGGGTATGTAGGCA | 22 | scaffold1113.0 | NO | miRCAT |
miRn31 | CGAACTTGGTGGATTAGGAGG | 21 | scaffold30.0 | NO | miRCAT |
miRn32 | CGAGGGTGTGGTGTAGGGTGG | 21 | scaffold181.0 | NO | miRCAT |
miRn33 | CGATGAACGGACGTGATTGGA | 21 | scaffold10.0 | NO | miRCAT |
miRn34 | CGATGTACGATGAACGGACACA | 22 | scaffold1279.0 | NO | miRCAT |
miRn35 | CGCCTTGGCGAAACTCTAGGAA | 22 | scaffold310.0 | NO | miRCAT |
miRn36 | CGGAATACGGATGGTACACCA | 21 | scaffold63.0 | NO | miRCAT |
miRn37 | CGGATTTCGTGGTCAGGAGGA | 21 | scaffold228.0 | NO | miRCAT |
miRn38 | CGGTCAGTAGGATCCCAAGGCA | 22 | scaffold242.0 | NO | miRCAT |
miRn39 | CGTACGATATACAATGAACGGT | 22 | scaffold171.0 | NO | miRCAT |
miRn40 | CGTACGATCTACGATGAACGG | 21 | scaffold182.0 | NO | miRCAT |
miRn41 | CTAATGACATTATAGAGGACA | 21 | scaffold103.0 | NO | miRCAT |
miRn42 | CTGCACAATGTACGATGAACGG | 22 | scaffold13.0 | NO | miRCAT |
miRn43 | CTGTACGATATATGATGAACGG | 22 | scaffold1196.0 | NO | miRCAT |
miRn44 | GAATACGGATGGTACACCAT | 20 | scaffold330.0 | NO | miRCAT |
miRn45 | GCATTTGGATTTGTCTGACTTG | 22 | scaffold1206.0 | NO | miRCAT |
miRn46 | GGGACTTTCAAATTCCGAGGG | 21 | scaffold353.0 | NO | miRCAT |
miRn47 | GTCAAACTGTGATTTGTAGGCA | 22 | scaffold94.0 | NO | miRCAT |
miRn48 | GTGACTGATGACATGTTGTAG | 21 | scaffold322.0 | NO | miRCAT |
miRn49 | TAGGCGTAGATAGACCGTGGG | 21 | scaffold144.0 | NO | miRCAT |
miRn50 | TCAAATTTCAAAGGTCCGGATC | 22 | scaffold221.0 | NO | miRCAT |
miRn51 | TCACACTATGGAGCGATGGTC | 21 | scaffold1.0 | NO | miRCAT |
miRn52 | TCCTCGAACTGTAGCAATGGC | 21 | scaffold44.1 | NO | miRCAT |
miRn53 | TCTAACGGTCAAGAGGATGTC | 21 | scaffold751.0 | NO | miRCAT |
miRn54 | TCTGGATGCATGAATTTGGTA | 21 | scaffold83.0 | NO | miRCAT |
miRn55 | TGAACGGACATGATTTGAGGA | 21 | scaffold3.0 | NO | miRCAT |
miRn56 | TGGATTTGGTAGAAGGGATCC | 21 | scaffold12.0 | NO | miRCAT |
miRn57 | TGTGATGTGTGGTTACGGTT | 20 | scaffold235.0 | NO | miRCAT |
miRn58 | TTCAGGGCTCTGAGTGGGATGG | 22 | scaffold48.0 | NO | miRCAT |
miRn59 | TTGGATTAAAATTGAACGGCC | 21 | scaffold114.0 | NO | miRCAT |