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Table 3 Target of pear-specific miRNAs in pear identified by degradome sequencing

From: Small RNA and PARE sequencing in flower bud reveal the involvement of sRNAs in endodormancy release of Japanese pear (Pyrus pyrifolia 'Kosui')

ID Gene Cleavage Position Category Allan Score P-Value TAIR annotation Gene description
miRn1 Pbr011776.1 240 2 2.5 0.05 AT5G43630 TZP
miRn1 Pbr018332.1 240 2 2.5 0.01 AT5G43630 TZP
miRn4 Pbr011743.1 328 0 2 0 AT1G56510 ACTIVATED DISEASE RESISTANCE 2
miRn6 Pbr011682.2 253 2 1.5 0 AT5G36930 NA
miRn6 Pbr030895.1 271 2 2 0.01 AT5G17680 NA
miRn8 Pbr039988.1 1450 2 3 0.05 AT1G54130 RELA/SPOT HOMOLOG 3
miRn9 Pbr038135.1 1057 2 3.5 0.02 AT4G30110 heavy metal atpase 2
miRn11 Pbr000099.1 885 2 3.5 0.05 AT1G12000 NA
miRn13 Pbr027465.1 111 0 4.5 0.02 AT3G25800 PR 65
miRn18 Pbr002749.2 2267 3 4 0.05 AT4G10320 NA
miRn23 Pbr009493.1 78 2 2.5 0 AT2G29670 NA
miRn24 Pbr026566.1 243 2 2 0.03 AT4G24330 NA
miRn24 Pbr004924.1 978 0 4 0.02 AT3G52110 NA
miRn31 Pbr036178.1 256 3 3.5 0.04 AT3G26510 NA
miRn32 Pbr006676.1 1157 0 4 0.02 AT5G26710 NA
miRn38 Pbr029169.1 420 3 4 0.04 AT4G02040 NA
miRn38 Pbr007316.1 420 3 4 0.04 AT4G02040 NA
miRn41 Pbr034171.1 167 3 3.5 0.02 AT2G35680 NA
miRn41 Pbr027934.1 1315 2 3 0.05 AT5G64030 NA
miRn41 Pbr024612.1 167 3 3.5 0.03 AT2G35680 NA
miRn41 Pbr013804.1 1105 3 3.5 0.01 AT2G02955 maternal effect embryo arrest 12
miRn41 Pbr030334.1 899 0 4 0.02 AT5G60770 nitrate transporter 2.4
miRn41 Pbr024607.1 167 3 3.5 0.01 AT2G35680 NA
miRn41 Pbr029396.1 167 3 3.5 0.03 AT2G35680 NA
miRn46 Pbr035452.1 735 3 3 0.02 AT4G05320 polyubiquitin 10
miRn54 Pbr000659.1 966 2 2.5 0.02 AT5G13030 NA
miRn54 Pbr005201.1 1526 1 4 0 AT5G35690 NA
miRn55 Pbr009389.1 551 1 4.5 0.04 AT3G12380 actin-related protein 5
miRn57 Pbr039571.2 962 2 2.5 0.03 AT2G34470 urease accessory protein G