Table 2 Summary of database search for candidate genes
Candidate gene name (ab) | OrthoDB7_ID | Accession No. of Drosophila homolog for query | Accession No. of Tribolium homolog for query | Isotig number of the homolog or highest similarity (Drosophila query) | Isotig number of the homolog or highest similarity (Tribolium query) | e-value (Drosophila query) | e-value (Tribolium query) | Longest hit length and the percentage of amino acid identity (Drosophila query) | Longest hit length and the percentage of amino acid identity (Tribolium query) | Identified as Cyclommatus homolog of |
|---|---|---|---|---|---|---|---|---|---|---|
groucho (gro) | EOG7BD0RV | NM_001260380 | XM_963022 | 7235 | 7235 | 0 | 0 | 321/355 (90Â %) | 323/348 (93Â %) | groucho (gro) |
ovo/shavenbaby (ovo) | EOG7C0766 | NM_001169202 | XM_969788 | 7894 | 7894 | 9.00E-99 | 5.00E-131 | 133/157 (85Â %) | 181/192 (94Â %) | ovo/shavenbaby (ovo) |
sansfille (snf) | EOG78WZ6X | NM_078490 | XM_963178 | 10553 | 10553 | 5.00E-88 | 2.00E-107 | 85/98 (87Â %) | 99/106 (93Â %) | sansfille (snf) |
hopscotch (hop) | EOG74JNNN | NM_078564 | XM_969329 | 5920 | 5920 | 3.00E-87 | 0 | 39/69 (57Â %) | 194/248 (78Â %) | hopscotch (hop) |
fruitless (fru) | EOG7S84VN | NM_079673 | NM_001164218 | 8868 | 8868 | 1.00E-76 | 3.00E-138 | 97/125 (78Â %) | 124/156 (79Â %) | fruitless (fru) |
virillizer (vir) | EOG7DRWGS | NM_080161 | XM_001807225 | 8354 | 7116 | 9.00E-54 | 2.00E-179 | 62/80 (78Â %) | 81/126 (64Â %) | virillizer (vir) |
daughterless (da) | EOG7BGW18 | NM_001273411 | XM_968179 | 12902 | 12902 | 4.00E-53 | 4.00E-93 | 89/98 (91Â %) | 122/126 (97Â %) | daughterless (da) |
female lethal d (fl(2)d) | EOG7KT8QP | NM_166010 | XM_969964 | 4453 | 4453 | 1.00E-51 | 2.00E-116 | 55/63 (87Â %) | 116/142 (82Â %) | female lethal d (fl(2)d) |
deadpan (dpn) | EOG7X6ZFD | NM_057575 | XM_962601 | 10698 | 10698 | 7.00E-47 | 1.00E-80 | 73/118 (62Â %) | 109/132 (83Â %) | deadpan (dpn) |
transformer2 (tra2) | EOG7Z3SMD | NM_057416 | XM_963457 | 1275 | 1275 | 2.00E-41 | 2.00E-79 | 59/107 (55Â %) | 111/120 (93Â %) | transformer2 (tra2) |
intersex (ix) | EOG7162KM | NM_136833 | XM_008200746 | 10843 | 10843 | 4.00E-32 | 4.00E-68 | 29/47 (62Â %) | 108/143 (76Â %) | intersex (ix) |
Sex-lethal (Sxl) | EOG72ZQVX | NM_001031891 | NM_001145943 | 4016 | 10319 | 4.00E-48 | 3.00E-42 | 63/128 (49Â %) | 68/100 (68Â %) | Sex-lethal (Sxl) |
extramacrochaetae (emc) | EOG7QCMBK | NM_079152 | XM_964922 | 9148 | 9148 | 2.00E-26 | 1.00E-63 | 40/70 (57Â %) | 88/112 (79Â %) | extramacrochaetae (emc) |
dissatisfaction (dsf) | EOG7VJ5CF | NM_001273180 | XM_970162 | 6548 | 6548 | 3.00E-43 | 3.00E-51 | 38/107 (36Â %) | 41/107 (38Â %) | ultraspiracle (usp) |
hermaphrodite (her) | EOG7JXFJ7 | NM_001273577 | Not found in OrthoDB | 9417 | NS | 4.00E-10 | NS | 11/34 (32Â %) | NS | Hypothetical protein |
degringolade (dgrn) | EOG7KX50F | NM_141339 | Not found in OrthoDB | 7560 | NS | 2.00E-04 | NS | 12/27 (44Â %) | NS | E3 ubiquitin-protein ligase |
scute/sisterlessB (sc) | EOG7HJ870 | NM_057455 | Not found in OrthoDB | 9495 | NS | 0.01 | NS | 14/24 (58Â %) | NS | delilah (dei) |
ovarian tumor (otu) | EOG7N9B8P | NM_001272403 | EEZ98091 | 1660 | 1444 | 0.02 | 0.65 | 16/46 (35Â %) | 11/37 (30Â %) | Hypothetical protein/terribly reduced optic lobes (trol) |
standstill (stil) | EOG7RVNX6 | NM_057404 | Not found in OrthoDB | 3203 | NS | 0.06 | NS | 11/34 (32Â %) | NS | Brain-enriched guanylate kinase-associated protein |
transformer (tra) | EOG7HN4HG | NM_079390 | JQ857102 | 2890 | 4317 | 0.12 | 2.00E-08 | 10/27 (37Â %) | 17/41 (41Â %) | mitochondrial ribosomal protein L1/ transformer (tra) |
runt (run) | EOG73RPRJ | NM_078700 | XM_964184 | 7872 | 5910 | 0.28 | 0.26 | 14/33 (42Â %) | 11/18 (61Â %) | ribosomal protein L4e/egalitarian (egl) |
doublesex (dsx) | EOG77DWNS | NM_169202 | XM_001807396 | 2520 | 6093 | 0.55 | 0 | 10/19 (53Â %) | 16/31 (52Â %) | NSFL1 cofactor p47/Ubiquinol-cytochrome c reductase core protein 1 |
sisterless-A (sisA) | EOG7FZBDN | NM_078561 | Not found in OrthoDB | 6705 | NS | 0.66 | NS | 17/45 (38Â %) | NS | glypican-4 |
outstreched (os) | EOG7TJFZ9 | NM_001103545 | Not found in OrthoDB | 3953 | NS | 0.85 | NS | 11/30 (37Â %) | NS | High mobility group protein DSP1 |