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Table 2 Summary of database search for candidate genes

From: Identification and functional analyses of sex determination genes in the sexually dimorphic stag beetle Cyclommatus metallifer

Candidate gene name (ab) OrthoDB7_ID Accession No. of Drosophila homolog for query Accession No. of Tribolium homolog for query Isotig number of the homolog or highest similarity (Drosophila query) Isotig number of the homolog or highest similarity (Tribolium query) e-value (Drosophila query) e-value (Tribolium query) Longest hit length and the percentage of amino acid identity (Drosophila query) Longest hit length and the percentage of amino acid identity (Tribolium query) Identified as Cyclommatus homolog of
groucho (gro) EOG7BD0RV NM_001260380 XM_963022 7235 7235 0 0 321/355 (90 %) 323/348 (93 %) groucho (gro)
ovo/shavenbaby (ovo) EOG7C0766 NM_001169202 XM_969788 7894 7894 9.00E-99 5.00E-131 133/157 (85 %) 181/192 (94 %) ovo/shavenbaby (ovo)
sansfille (snf) EOG78WZ6X NM_078490 XM_963178 10553 10553 5.00E-88 2.00E-107 85/98 (87 %) 99/106 (93 %) sansfille (snf)
hopscotch (hop) EOG74JNNN NM_078564 XM_969329 5920 5920 3.00E-87 0 39/69 (57 %) 194/248 (78 %) hopscotch (hop)
fruitless (fru) EOG7S84VN NM_079673 NM_001164218 8868 8868 1.00E-76 3.00E-138 97/125 (78 %) 124/156 (79 %) fruitless (fru)
virillizer (vir) EOG7DRWGS NM_080161 XM_001807225 8354 7116 9.00E-54 2.00E-179 62/80 (78 %) 81/126 (64 %) virillizer (vir)
daughterless (da) EOG7BGW18 NM_001273411 XM_968179 12902 12902 4.00E-53 4.00E-93 89/98 (91 %) 122/126 (97 %) daughterless (da)
female lethal d (fl(2)d) EOG7KT8QP NM_166010 XM_969964 4453 4453 1.00E-51 2.00E-116 55/63 (87 %) 116/142 (82 %) female lethal d (fl(2)d)
deadpan (dpn) EOG7X6ZFD NM_057575 XM_962601 10698 10698 7.00E-47 1.00E-80 73/118 (62 %) 109/132 (83 %) deadpan (dpn)
transformer2 (tra2) EOG7Z3SMD NM_057416 XM_963457 1275 1275 2.00E-41 2.00E-79 59/107 (55 %) 111/120 (93 %) transformer2 (tra2)
intersex (ix) EOG7162KM NM_136833 XM_008200746 10843 10843 4.00E-32 4.00E-68 29/47 (62 %) 108/143 (76 %) intersex (ix)
Sex-lethal (Sxl) EOG72ZQVX NM_001031891 NM_001145943 4016 10319 4.00E-48 3.00E-42 63/128 (49 %) 68/100 (68 %) Sex-lethal (Sxl)
extramacrochaetae (emc) EOG7QCMBK NM_079152 XM_964922 9148 9148 2.00E-26 1.00E-63 40/70 (57 %) 88/112 (79 %) extramacrochaetae (emc)
dissatisfaction (dsf) EOG7VJ5CF NM_001273180 XM_970162 6548 6548 3.00E-43 3.00E-51 38/107 (36 %) 41/107 (38 %) ultraspiracle (usp)
hermaphrodite (her) EOG7JXFJ7 NM_001273577 Not found in OrthoDB 9417 NS 4.00E-10 NS 11/34 (32 %) NS Hypothetical protein
degringolade (dgrn) EOG7KX50F NM_141339 Not found in OrthoDB 7560 NS 2.00E-04 NS 12/27 (44 %) NS E3 ubiquitin-protein ligase
scute/sisterlessB (sc) EOG7HJ870 NM_057455 Not found in OrthoDB 9495 NS 0.01 NS 14/24 (58 %) NS delilah (dei)
ovarian tumor (otu) EOG7N9B8P NM_001272403 EEZ98091 1660 1444 0.02 0.65 16/46 (35 %) 11/37 (30 %) Hypothetical protein/terribly reduced optic lobes (trol)
standstill (stil) EOG7RVNX6 NM_057404 Not found in OrthoDB 3203 NS 0.06 NS 11/34 (32 %) NS Brain-enriched guanylate kinase-associated protein
transformer (tra) EOG7HN4HG NM_079390 JQ857102 2890 4317 0.12 2.00E-08 10/27 (37 %) 17/41 (41 %) mitochondrial ribosomal protein L1/ transformer (tra)
runt (run) EOG73RPRJ NM_078700 XM_964184 7872 5910 0.28 0.26 14/33 (42 %) 11/18 (61 %) ribosomal protein L4e/egalitarian (egl)
doublesex (dsx) EOG77DWNS NM_169202 XM_001807396 2520 6093 0.55 0 10/19 (53 %) 16/31 (52 %) NSFL1 cofactor p47/Ubiquinol-cytochrome c reductase core protein 1
sisterless-A (sisA) EOG7FZBDN NM_078561 Not found in OrthoDB 6705 NS 0.66 NS 17/45 (38 %) NS glypican-4
outstreched (os) EOG7TJFZ9 NM_001103545 Not found in OrthoDB 3953 NS 0.85 NS 11/30 (37 %) NS High mobility group protein DSP1
  1. NS not searched
  2. Bold numbers indicated isotig numbers annotated as focal gene
  3. Genes indicated in bold denote the candidate genes identified and annotated in our C. metalifer transcriptome database