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Table 1 Sequencing and assembly of M. tuberculosis 18b genome

From: Genomic and transcriptomic analysis of the streptomycin-dependent Mycobacterium tuberculosis strain 18b

Sequencing

Assembly

Sequencing platform

Average read length (nt)

Genome coverage

Newbler v2.6

MIRA v3.9.15

HGAP2

Manual finishing

454 PEsa

176

76xb

3 scaffolds

94 contigs

NA

1 contig

Illumina

35

48x

NA

NA

IonTorrent

127

11x

NA

NA

PacBio

2753c

79xc

NA

NA

4 contigs

  1. a3Kb and 8Kb paired-end libraries
  2. bExcluding duplicate paired-end reads
  3. cFiltered subreads
  4. NA not applicable
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BMC Genomics

ISSN: 1471-2164

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