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Table 1 Sequencing and assembly of M. tuberculosis 18b genome

From: Genomic and transcriptomic analysis of the streptomycin-dependent Mycobacterium tuberculosis strain 18b

Sequencing Assembly
Sequencing platform Average read length (nt) Genome coverage Newbler v2.6 MIRA v3.9.15 HGAP2 Manual finishing
454 PEsa 176 76xb 3 scaffolds 94 contigs NA 1 contig
Illumina 35 48x NA NA
IonTorrent 127 11x NA NA
PacBio 2753c 79xc NA NA 4 contigs
  1. a3Kb and 8Kb paired-end libraries
  2. bExcluding duplicate paired-end reads
  3. cFiltered subreads
  4. NA not applicable