Fig. 2
From: Evaluation of DISCOVAR de novo using a mosquito sample for cost-effective short-read genome assembly
Analyzing the quality of 5 An. arabiensis genome or transcriptome assemblies in terms of gene content. We looked for three categories of genes in the Trinity transcriptome, Ddn-Anara (labeled here as the 126× DISCOVAR de novo assembly), the higher-coverage DISCOVAR de novo assemblies, the ALLPATHS-LG AaraD1 contigs, and the ALLPATHS-LG AaraD1 scaffolds. a Benchmarking universal single-copy orthologs (BUSCOs) from the An. gambiae PEST genome. b All PEST genes, excluding 5′ and 3′ untranslated regions (UTRs). The result of using whole genes can be seen in the genes not recovered from the Trinity assembly. c Cuticle protein genes from low-complexity gene families identified in Cornman et al. 2009