Skip to main content

Table 5 Effects of 23 lead SNPs on the individual traits (signed values with |t| > 1 are shown)

From: Detailed phenotyping identifies genes with pleiotropic effects on body composition

 

Group 1a

Group 2a

Group 3a

Group 4a

Group 5a

Lead SNP orderb

1st

2nd

3rd

4th

5th

6th

7th

8th

9th

10th

11th

12th

13th

14th

15th

16th

17th

18th

19th

20th

21st

22nd

23rd

PSWT

1.8

 

8.3

6.3

  

2.4

−1.8

   

3.7

 

2.3

2.3

      

−1.4

2.2

HCWT

  

5.6

1.6

  

1.3

−1.4

 

1.1

 

3.0

1.0

         

4.0

LLWT

1.4

  

1.6

    

1.1

2.1

 

3.1

6.5

−1.3

1.6

  

−1.7

    

1.3

TOP

2.0

 

3.4

5.5

−1.2

  

−1.8

 

2.9

 

2.4

3.3

      

1.2

−1.6

1.4

2.5

RND

2.5

 

7.2

8.1

   

−1.7

 

3.1

 

1.9

 

1.4

   

−1.0

   

−1.0

2.5

BONE

2.7

2.7

10.9

13.7

       

2.2

 

2.6

1.3

−2.2

     

1.7

1.2

LEGBONE

5.7

2.4

12.3

19.1

   

−1.3

   

2.7

   

−1.6

   

−1.1

−1.0

2.3

 

LMY

3.3

1.2

5.0

8.7

 

1.2

−1.5

  

1.9

 

−1.2

2.9

   

1.8

   

−2.5

−2.5

−1.0

DRESS%

−3.6

−3.1

−3.4

−8.7

−2.4

  

1.2

  

1.1

  

−1.6

     

−1.3

1.5

 

4.7

DMLOIN

−1.2

 

−2.6

−6.4

      

−2.1

 

−1.3

 

−2.1

 

2.7

1.9

1.1

    

IMF

 

−1.7

−1.8

−4.0

2.2

   

−1.8

 

−2.0

 

−5.9

 

−1.6

  

2.7

1.3

−1.4

−1.5

1.2

−1.3

LLFAT

−2.5

 

−4.1

−6.4

  

2.0

1.8

   

1.7

 

1.9

 

1.1

   

2.5

3.2

 

2.7

CFATSCORE

−2.4

1.1

−4.1

−4.0

  

1.1

1.2

 

1.4

−1.5

−1.4

        

2.0

  

CCFAT

−2.5

−2.9

−3.1

−9.2

  

3.0

1.4

  

−2.1

1.9

−1.7

1.2

−1.5

 

−1.7

   

1.3

  

HGRFAT

−3.4

−1.9

−7.1

−9.3

  

1.8

 

2.2

 

−2.0

1.6

 

1.3

  

−1.5

  

1.9

1.5

1.5

1.0

CFAT5

−2.2

−2.2

−4.6

−4.6

 

−2.0

2.0

 

1.4

  

1.9

−1.2

   

−1.5

  

2.9

   

CEMW

2.1

 

1.2

5.4

1.1

1.2

      

1.1

−2.2

       

−1.9

2.3

CEMD

−2.9

−1.8

−5.0

−3.8

1.4

   

3.7

  

1.5

 

−2.5

 

1.6

   

1.6

−1.5

  

CEMA

−1.0

−1.9

−3.4

 

1.1

   

2.7

  

1.6

2.0

−3.5

 

1.0

    

−1.6

 

1.9

SHEARF5

2.5

1.2

3.3

3.7

1.2

−1.0

  

−3.4

−2.6

 

8.0

5.6

1.2

   

−1.1

 

1.8

1.2

−4.5

 

SHEARF1

2.7

1.8

1.1

1.8

1.4

 

−1.2

 

−2.4

−1.3

 

5.5

3.3

 

−1.5

   

−1.3

2.6

 

−1.3

 

MYOGLOBIN

2.4

−2.3

−3.6

 

−1.3

  

5.4

5.5

6.3

2.1

2.0

 

2.1

1.4

−1.9

   

−1.2

  

GLYCOGEN

2.0

   

−1.9

  

1.5

7.2

1.0

    

1.0

8.8

     

−1.0

ICDHACTIVITY

−1.2

 

−1.5

1.4

 

−1.4

   

5.4

  

−1.8

  

−6.9

  

−1.8

1.4

 

−1.0

−1.4

RCL4

−1.1

 

1.4

2.3

  

1.3

 

−4.9

−4.3

−5.1

−1.5

−3.0

−1.5

−2.5

−3.4

  

1.6

   

2.3

RCL3

−2.1

 

2.0

2.2

    

−4.0

−5.5

−4.6

−2.5

−3.7

−2.3

−2.2

−3.1

  

2.0

   

2.5

RCL2

−1.4

 

1.6

2.8

    

−3.7

−5.3

−4.2

−2.9

−3.7

−2.7

−2.5

−3.5

 

−1.5

1.3

1.2

  

1.7

RCL1

  

1.2

1.8

    

−3.8

−2.3

−3.8

 

−1.6

 

−2.7

−1.1

3.7

1.1

1.9

1.9

 

1.3

1.2

RCb4

  

1.2

−1.3

     

−2.6

1.1

    

2.9

  

1.6

 

1.6

−1.1

 

RCb3

 

−1.7

 

−2.0

       

1.7

1.0

1.5

1.2

1.8

 

−2.8

     

RCb2

   

−2.8

−1.2

 

1.1

−1.1

   

2.5

 

1.5

2.0

2.6

2.2

      

RCb1

  

−1.7

−2.6

   

−2.0

−1.8

5.0

 

1.9

   

3.6

3.2

 

1.4

 

1.3

  

RCa4

 

−1.6

 

−3.3

   

−1.6

  

4.1

3.9

2.1

1.3

1.4

7.4

4.1

1.5

2.1

 

2.4

−1.5

−1.1

RCa3

1.1

−2.7

−1.1

−3.9

 

1.2

 

−1.7

 

2.0

3.7

5.6

2.6

2.0

 

7.5

4.7

 

1.6

 

1.6

  

RCa2

1.2

−2.4

−1.7

−4.1

−1.3

  

−1.6

 

3.6

3.2

5.3

2.3

1.6

 

7.2

6.0

1.4

1.5

 

1.3

−1.1

 

RCa1

 

−1.1

−3.3

−4.1

   

−1.8

2.0

6.7

2.8

3.2

2.0

1.5

 

6.6

3.0

   

1.4

 

−2.6

CFb

−1.2

  

−3.1

  

1.3

 

−2.9

1.3

 

−1.2

 

2.4

 

2.9

     

3.1

 

CFa

  

−1.6

−3.9

−2.4

    

6.9

3.9

−1.0

 

3.4

 

4.3

−1.4

−1.2

   

1.9

 

CFL

−1.2

1.0

1.3

1.3

    

−5.9

−2.4

−6.1

 

−3.7

  

−2.3

1.7

 

2.5

−1.1

   

PH24LL

  

2.5

3.0

    

−2.1

−11.1

  

−2.5

  

−1.1

−4.9

  

−3.1

 

−1.9

1.6

PH24ST

   

−1.4

    

−2.0

−9.0

 

−1.1

  

1.3

 

−5.6

 

−1.2

  

−1.1

−2.5

IRON

  

−2.8

−1.5

  

1.4

 

5.2

6.2

3.7

 

1.4

1.5

  

−1.9

 

−1.3

1.1

1.2

−2.7

−3.5

ZINC

1.3

  

−2.3

    

−3.7

   

−2.3

     

1.1

 

−1.7

−1.9

 

EPADPADHA

1.1

 

−1.8

 

1.1

−1.3

 

2.5

3.3

−1.1

   

−1.2

−7.6

−2.2

3.6

   

−1.3

1.3

EPADHA

 

1.0

   

1.2

  

1.9

4.3

  

1.5

−1.3

 

−7.5

−2.1

2.6

 

1.6

1.9

−1.2

−1.8

FA_C22_6n3

2.5

1.1

−1.4

 

2.8

1.0

 

−1.8

2.4

3.6

   

−1.3

−1.3

−6.8

−1.0

 

1.5

2.6

6.8

−1.6

 

FA_C22_5n3

  

−1.5

    

2.8

1.0

−1.4

−1.1

 

1.0

−1.3

−5.8

 

3.5

  

−2.7

  

FA_C20_5n3

    

1.1

  

2.4

4.1

−1.6

 

2.2

 

−1.1

−8.2

 

3.3

    

2.4

FA_C20_4n6

2.0

  

1.3

1.5

1.3

 

−1.4

1.9

5.4

−2.3

1.2

1.1

  

−4.6

−2.9

−1.6

3.1

    

FA_C20_3n6

2.1

−1.4

  

−1.2

2.6

 

−1.2

2.2

2.8

−2.0

 

2.1

  

−5.7

 

2.4

8.2

   

1.3

FA_C18_2n6

   

2.7

    

3.7

    

−2.0

−6.1

  

−1.8

 

−2.2

  

FA_C18_0

 

−1.3

2.3

2.5

 

−2.5

−1.6

−1.8

−1.0

  

−2.1

−3.0

−2.7

5.5

1.4

   

1.2

  

1.2

FA_C16_0

−1.8

    

3.6

4.9

6.0

 

−1.6

 

−1.1

−1.3

−1.6

1.2

  

−2.0

 

1.2

−1.0

−1.1

 

FA_C14_0

−2.7

  

−2.7

 

4.9

8.4

3.7

 

−2.9

  

−1.2

          

FA_C12_0

−1.7

1.0

 

−3.6

−4.5

2.2

3.3

3.0

 

−3.3

   

−1.7

   

2.9

 

2.3

  

−1.9

FA_C10_0

 

1.5

  

−3.3

7.2

3.8

3.0

−2.1

−3.0

−1.2

 

−1.1

 

1.3

  

1.2

 

2.4

 

−2.0

 
  1. aGroup of the lead SNPs that were clustered together as shown on Fig. 5, bThis SNP order refers SNPs, which are given on Table 4