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Table 2 GO analysis for the commonly up regulated transcripts

From: De novo analysis of transcriptome reveals genes associated with leaf abscission in sugarcane (Saccharum officinarum L.)

Gene Ontology

GO_item

Transcript_number

P-value

Q-value

Cellular component

intracellular part

9

2.43E-02

4.38E-01

Molecular function

transition metal ion binding

35

1.02E-05

8.43E-04

 

iron ion binding

9

1.41E-05

1.17E-03

 

amine transmembrane transporter activity

1

1.08E-04

8.96E-03

 

nucleic acid binding transcription factor activity

6

6.72E-04

5.58E-02

Biological process

cellular homeostasis

3

5.30E-13

4.19E-11

 

organic substance transport

5

1.05E-09

8.32E-08

 

establishment of localization

2

3.04E-07

2.40E-05

 

response to stress

38

1.08E-06

8.50E-05

 

amino acid transport

1

7.57E-06

5.98E-04

 

DNA metabolic process

5

1.21E-05

9.53E-04

 

translation

2

1.16E-04

9.14E-03

 

purine nucleoside monophosphate biosynthetic process

1

3.29E-04

2.60E-02

 

cell morphogenesis

1

3.62E-04

2.86E-02

 

cellular protein modification process

15

7.43E-04

5.87E-02

 

transport

3

1.00E-03

7.91E-02

 

proteasomal ubiquitin-dependent protein catabolic process

2

1.59E-03

1.26E-01

 

cell wall biogenesis

2

1.94E-03

1.54E-01

 

vitamin K biosynthetic process

1

4.69E-03

3.71E-01

 

primary metabolic process

4

5.85E-03

4.62E-01

 

one-carbon metabolic process

7

6.35E-03

5.02E-01

 

branched-chain amino acid metabolic process

2

6.99E-03

5.52E-01

 

response to metal ion

4

7.13E-03

5.63E-01

 

polysaccharide metabolic process

1

7.30E-03

5.76E-01

 

glucose catabolic process

3

1.08E-02

8.55E-01