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Fig. 10 | BMC Genomics

Fig. 10

From: ChlamyNET: a Chlamydomonas gene co-expression network reveals global properties of the transcriptome and the early setup of key co-expression patterns in the green lineage

Fig. 10

Expression Levels (FPKM) of several CrDOF Neighbouring Genes and Distant Genes in the CrDOFin and CW15 Genotypes Grown in LD and SD Conditions. Three genes in the neighbourhood at distance two from CrDOF were chosen to illustrate the correct prediction provided by ChlamyNET with respect to their increase in expression level in the CrDOFin genotype when compared to CW15. These genes are fatty acid desaturase FAD6 (Cre13.g590500) involved in carbon metabolism, glutamate dehydrogenase GDH2 (Cre05.g232150) involved in nitrogen metabolism and serine/threonine kinase MAPKKK2 (Cre16.g684450) possibly involved in cell cycle regulation. Additionally, we selected three genes from the purple cluster located far away from the CrDOF gene in ChlamyNET to show that distant genes expression is not substantially affected by CrDOF overexpression. These genes are glycinamide ribonucleotide synthetase CrGARS (g18106), phosphoribosylglycinamide formyltransferase PGFT (Cre12.g550700), both involved in purine biosynthesis and plastid transcription factor PTAC3 (Cre12.g497350) involved in regulation of plastid genes

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