Association analysis for disease resistance to Fusarium oxysporum in cape gooseberry (Physalis peruviana L)

BMC Genomics

Table 5 Summary of association analysis for the severity variable

Species	SNP	Gene where SNP is located	Chromosome	Position	MAF	Before Box-cox transformation		After Box-cox transformation
						p-value	FDR Adjusted	p-value	FDR Adjusted
							p-value		p-value
Tomato	S8_62073300^a	Solyc08g081990.2	8	62,073,300	0.4643	0.0016	0.7129	0.0020	0.7631
	S12_46594754	Solyc12g049500.1	12	46,594,754	0.0408	0.0021	0.7129	0.0034	0.7631
	S5_61444687	Solyc05g051900.2	5	61,444,687	0.2347	0.0028	0.7129	0.0035	0.7631
	S2_42554381	Solyc02g084920.2	2	42,554,381	0.2143	0.0036	0.7129	0.0037	0.7631
	S2_42554396			42,554,396	0.2143	0.0036	0.7129	0.0037	0.7631
	S2_42554398			42,554,398	0.2143	0.0036	0.7129	0.0037	0.7631
	S5_63359509	Solyc05g054260.2	5	63,359,509	0.0663	0.0024	0.7129	0.0041	0.7631
	S7_869940	Solyc07g006030.2	7	869,940	0.4694	0.0048	0.7129	0.0046	0.7631
	S7_869967	Solyc07g006030.2	7	869,967	0.4694	0.0048	0.7129	0.0046	0.7631
	S9_65753970	Solyc09g091070.1	9	65,753,970	0.2347	0.0051	0.7129	0.0052	0.7631
	S2_14016967	Solyc02g021620.2	2	14,016,967	0.0867	0.0039	0.7129	0.0053	0.7631
Potato	S5_1237068	PGSC0003DMG400007522	5	1,237,068	0.0455	0.0008	0.8937	0.0023	0.9484
	S5_58756015	PGSC0003DMG400023316	5	58,756,015	0.0657	0.0012	0.8937	0.0027	0.9484
	S8_42535013	PGSC0003DMG400005498	8	42,535,013	0.4646	0.0021	0.8937	0.0029	0.9484
	S8_42534983	PGSC0003DMG400005498	8	42,534,983	0.4646	0.0021	0.8937	0.0029	0.9484
	S9_49247242	PGSC0003DMG400037435	9	49,247,242	0.2323	0.0052	0.9096	0.0049	0.9484
	S9_49247281	PGSC0003DMG400037435	9	49,247,281	0.2323	0.0052	0.9096	0.0049	0.9484

ISSN: 1471-2164