Association analysis for disease resistance to Fusarium oxysporum in cape gooseberry (Physalis peruviana L)

BMC Genomics

Table 6 Summary of association analysis for the AUDPC variable

Species	SNP	Gene where SNP is located	Chromosome	Position	MAF	Before box-cox transformation		After box-cox transformation
						p-value	FDR adjusted	p-value	FDR adjusted
							p-value		p-value
Tomato	S9_65685191	Solyc09g090940.2	9	65,685,191	0.4898	0.0011	0.9616	0.0015	0.9977
	S12_35821264	Solyc12g038490.1	12	35,821,264	0.4541	0.0059	0.9616	0.0024	0.9977
	S8_62073300^a	Solyc08g081990.2	8	62,073,300	0.4643	0.0096	0.9616	0.0058	0.9977
	S8_45545340	Solyc08g061260.2	8	45,545,340	0.3878	0.0101	0.9616	0.0079	0.9977
	S9_67526887	Solyc09g098450.2	9	67,526,887	0.3929	0.0066	0.9616	0.0090	0.9977
	S11_51389456	Solyc11g069690.1	11	51,389,456	0.0561	0.0056	0.9616	0.0097	0.9977
Potato	S9_49077916	PGSC0003DMG400046263	9	49,077,916	0.4899	0.0011	0.9493	0.0015	0.9498
	S12_35550547	Not near know genes	12	35,550,547	0.4546	0.0063	0.9493	0.0026	0.9498
	S3_37927302	Not near know genes	3	37,927,302	0.3030	0.0058	0.9493	0.0032	0.9498
	S8_42535013	PGSC0003DMG400005498	8	42,535,013	0.4647	0.0091	0.9493	0.0055	0.9498
	S8_42534983	PGSC0003DMG400005498	8	42,534,983	0.4647	0.0091	0.9493	0.0055	0.9498
	S2_52227231	PGSC0003DMG400042623	2	52,227,231	0.0202	0.0028	0.9493	0.0056	0.9498

ISSN: 1471-2164