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Table 3 Twenty most up-regulated genes with functional annotation during saprotrophic growth of R. microporus on H. brasiliensis

From: De novo transcriptomic assembly and profiling of Rigidoporus microporus during saprotrophic growth on rubber wood

Gene IDa

log2FCb

Hit accession numberc

Hit description

Pvalue

FDR

CL2561.Contig1

9.854

ref|YP_007374933.1

NADH dehydrogenase subunit 2

7.32E-07

6.38E-06

CL993.Contig4

9.262

gb|EJD04752.1

Alpha-ketoglutarate

2.40E-110

2.08E-106

CL2913.Contig1

9.167

gb|EJD07867.1

Cephalosporin esterase

1.11E-120

1.28E-116

Unigene7085

8.982

ref|YP_003204905.1

Endonuclease

4.55E-06

3.42E-05

CL4886.Contig1

8.858

gb|EJD00032.1

NAD-binding protein

2.68E-102

1.32E-98

Unigene4438

8.453

gb|EJD07869.1

Alpha/beta-hydrolase

5.03E-125

8.69E-121

CL4040.Contig1

8.302

K01046

Triacylglycerol lipase

2.75E-99

1.05E-95

Unigene7106

8.120

ref|YP_007374941.1

DNA-directed DNA polymerase

2.91E-05

1.85E-04

CL3467.Contig1

8.049

gb|EJD01641.1

Acid protease

1.53E-81

2.63E-78

Unigene6801

7.994

sp|Q5B8K7

Histone transcription regulator 3

3.58E-04

1.77E-03

Unigene7086

7.616

ref|YP_003495111.1

Apocytochrome b

5.32E-05

3.20E-04

CL4964.Contig4

7.609

gb|EJD02610.1

Manganese peroxidase 2

1.77E-107

1.22E-103

Unigene7189

7.428

gb|EJC97283.1

Pol poly protein

9.15E-04

4.07E-03

CL2419.Contig1

7.398

ref|YP_003495099.1

Cytochrome oxidase subunit 2

4.03E-04

1.97E-03

Unigene6789

7.317

sp|Q9UR07

Retrotransposable element Tf2

1.14E-03

4.94E-03

Unigene6787

7.259

sp|Q08438

Phosphopantothenoylcysteine decarboxylase

1.27E-03

5.43E-03

Unigene7063

7.192

ref|YP_001504350.1

Ribosomal protein S3

6.12E-04

2.86E-03

Unigene6978

7.101

ref|YP_004376378.1

Hyp16

1.72E-03

7.08E-03

Unigene776

7.062

sp|Q7RX84

Pre-mRNA-splicing factor

1.52E-84

2.92E-81

Unigene7105

7.032

ref|YP_001504344.1

DNA polymerase 2

1.96E-03

7.92E-03

  1. Gene IDa refers to names of the assembled unigenes; Distinct clusters represented with the prefix (CL) represents cluster unigenes; the same cluster contains similar unigenes (>70 % similarity). Distinct singletons represented with the prefix (Unigene) represents unigenes from a single gene. bBinary logarithm of the fold change calculated from the fragments per kilobase per million reads (FPKM). cCorresponds to best hit of NR/SwissProt/KEGG database