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Table 4 Twenty most down-regulated genes with functional annotation during saprotrophic growth of R. microporus on H. brasiliensis

From: De novo transcriptomic assembly and profiling of Rigidoporus microporus during saprotrophic growth on rubber wood

Gene IDa

log2FCb

Hit accession numberc

Hit description

Pvalue

FDR

Unigene4869

−10.156

sp|P41816

NADPH dehydrogenase 3

5.53E-57

2.85E-54

CL2604.Contig1

−8.677

ref|XP_001835437.2

YjgH family protein

2.44E-19

1.01E-17

Unigene802

−7.744

gb|EIN08964.1

NAD(P)-binding protein

1.05E-132

3.61E-128

CL391.Contig4

−7.689

sp|P54387

NADP-specific glutamate dehydrogenase

3.89E-14

9.36E-13

CL4092.Contig1

−7.345

gb|EIN05560.1

Cytochrome P450

2.85E-43

6.38E-41

CL2382.Contig2

−7.177

gb|EJD01684.1

Fungal hydrophobin

1.38E-27

1.18E-25

Unigene5403

−7.002

ref|XP_003022235.1

PHD finger and BAH domain protein

7.88E-80

1.13E-76

CL144.Contig15

−6.896

K01210

Glucan 1,3-beta-glucosidase

2.71E-06

2.13E-05

CL160.Contig25

−6.798

gb|EJD02081.1

Pkinase-domain-containing protein

5.11E-08

5.44E-07

CL486.Contig2

−6.570

gb|EJC97746.1

Hexose transporter

8.37E-39

1.45E-36

CL354.Contig15

−6.461

gb|EIW56335.1

Cytochrome P450

1.14E-59

7.28E-57

CL1122.Contig7

−6.444

sp|O14351

Uncharacterized oxidoreductase

2.44E-06

1.93E-05

CL144.Contig16

−6.416

K01210

Glucan 1,3-beta-glucosidase

2.73E-04

1.39E-03

CL476.Contig3

−6.389

gb|EJD04564.1

FAD/NAD-binding domain-containing protein

1.20E-05

8.26E-05

CL1122.Contig8

−6.292

sp|P40580

Benzil reductase

7.59E-06

5.45E-05

Unigene5818

−6.283

gb|EKM54599.1

Glycoside hydrolase family 16

1.34E-90

3.31E-87

CL144.Contig11

−6.175

sp|Q5AVZ7

Glucan 1,3-beta-glucosidase

1.10E-03

4.76E-03

CL354.Contig5

−6.145

gb|EIW56335.1

Cytochrome P450

1.94E-25

1.39E-23

CL1413.Contig3

−6.137

gb|EJD01676.1

14-3-3 protein

1.43E-03

6.02E-03

CL4617.Contig2

−6.126

gb|EGR50668.1

N-terminal WSC domain-containing protein

9.82E-97

3.08E-93

  1. Gene IDa refers to names of the assembled unigenes; Distinct clusters represented with the prefix (CL) represents cluster unigenes; the same cluster contains similar unigenes (>70 % similarity). Distinct singletons represented with the prefix (Unigene) represents unigenes from a single gene. bBinary logarithm of the fold change calculated from the fragments per kilobase per million reads (FPKM). cCorresponds to best hit of NR/SwissProt/KEGG database