From: A method for near full-length amplification and sequencing for six hepatitis C virus genotypes
Region | Round | Sense | GT | Primer name | Sequence (5′-3′)a | Genome binding positionb | Published |
---|---|---|---|---|---|---|---|
3′UTR | RT | - | All | vir7 | AAAAAAAAAAAAAAAAAAAA | 9418-9486 | [13] |
5′UTR-NS5B | Outer | + | All | KY80 | GCAGAAAGCGTCTAGCCATGGCGT | 68-91 | [28] |
- | 1 | Vir45a | CCAGCGGGGYCGGGCVYGAGACA | 9262-9314 | Unpublished | ||
- | 2 | hep323 | GGAGTGTASCTARTGTGTGCCGCT | 9378-9401 | [11] | ||
- | 3 | hep234b | TGGAGTGTTATCYTACCAGC | 9378-9397 | [11] | ||
- | 4 | GEN4.R1 | TCGGGCAYGRGACAYGCTGTGATAAATG | 9278-9305 | [11] | ||
- | 5 | GEN5.R1 | TCGGGCACGGGACATGCTGTGATAAATG | 9278-9305 | Unpublished | ||
- | 6 | Vir65 | CGRGCCYGGGACACGCTGTG | 9285-9304 | Unpublished | ||
5′UTR-NS5B | Inner | + | All | hep21b | GAGTGTYGTRCAGCCTCCAGG | 98-118 | [20] |
- | 1,2,3,6 | hep296 | CGGGCAYGAGACASGCTGTGATAWATGTC | 9276-9304 | [11] | ||
- | 4 | GEN4.R2 | TCTCCCCCGCCRGCGCCYACCGTRAACC | 9250-9277 | Unpublished | ||
- | 5 | GEN5.R2 | TCCCCCCCGCCRGCGCCAACGGTRAACC | 9250-9277 | Unpublished |