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Fig. 3 | BMC Genomics

Fig. 3

From: Improvement of the banana “Musa acuminata” reference sequence using NGS data and semi-automated bioinformatics methods

Fig. 3

Example of a clue leading to scaffold fusion. a Graphical representation of paired read leading to the identification of fusion of scaffold1112 into scaffold24. This representation is drawn using Scaffremodler’s tools. In the inner circle, links between read pairs are drawn with the color code described in Fig. 2: grey for concordant pairs; red and orange for discordant in size; purple, green and blue for orientation discordant pairs. The second circle represents scaffold in blue with gaps as black regions. The next represents the proportion of discordant reads and the last circle represents read coverage as in Fig. 2. Red and blue beams linking scaffold1112 and scaffold24 allowed identifying scaffold fusion schematized in (b). Inserting scaffold1112 into scaffold24 will correct the discordant red links and correct the orientation of discordant blue links

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