Table 1 Statistics on scaffold assemblies
V1 (D'hont et al. 2012) | SSPACE | Fusion/joining/splitting/gap re-estimation | IRYS scaffold | GapCloser | |
|---|---|---|---|---|---|
Scaffold number | 7 513 | 2 267 | 1 572 | 1 532 | 1 532 |
Cumulated size | 472 210 317 | 438 736 528 | 443 852 100 | 450 994 104 | 450 697 673 |
Unknown sites (%) | 81 728 542 (17.3) | 48 267 272 (11.0) | 53 378 493 (12.3) | 60 520 497 (13.4) | 45 175 659 (10.0) |
N50 (scaffold number) | 1 311 088 (65) | 1 545 585 (52) | 2 890 075 (28) | 3 014 384 (26) | 3 016 874 (26) |
N80 (scaffold number) | 316 579 (299) | 370 770 (242) | 491 628 (169) | 578 880 (150) | 579 793 (150) |
N90 (scaffold number) | 54 335 (647) | 169 980 (416) | 201 127 (305) | 234 686 (268) | 234 825 (267) |