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Table 1 Statistics on scaffold assemblies

From: Improvement of the banana “Musa acuminata” reference sequence using NGS data and semi-automated bioinformatics methods

  V1 (D'hont et al. 2012) SSPACE Fusion/joining/splitting/gap re-estimation IRYS scaffold GapCloser
Scaffold number 7 513 2 267 1 572 1 532 1 532
Cumulated size 472 210 317 438 736 528 443 852 100 450 994 104 450 697 673
Unknown sites (%) 81 728 542 (17.3) 48 267 272 (11.0) 53 378 493 (12.3) 60 520 497 (13.4) 45 175 659 (10.0)
N50 (scaffold number) 1 311 088 (65) 1 545 585 (52) 2 890 075 (28) 3 014 384 (26) 3 016 874 (26)
N80 (scaffold number) 316 579 (299) 370 770 (242) 491 628 (169) 578 880 (150) 579 793 (150)
N90 (scaffold number) 54 335 (647) 169 980 (416) 201 127 (305) 234 686 (268) 234 825 (267)