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Table 4 Statistics on annotation transfer between the first release of the assembly and the new release

From: Improvement of the banana “Musa acuminata” reference sequence using NGS data and semi-automated bioinformatics methods

 

First release (D'hont et al. 2012)

New release (version 2)

Identifier

Pseudo-molecule size (bp)c

Number

Pseudo-molecule size (bp)c

Number

 

RefSeqa

BGHb

 

RefSeqa

BGHb

Consensus

chr01

27 573 629

2 407

2 836

29 070 452

2 038

2 427

2 372

chr02

22 054 697

1 975

2 328

29 511 734

2 172

2 563

2 517

chr03

30 470 407

2 796

3 251

35 020 413

2 991

3 443

3 371

chr04

30 051 516

2 850

3 368

37 105 743

3 512

4 123

4 018

chr05

29 377 369

2 583

2 972

41 853 232

2 824

3 268

3 215

chr06

34 899 179

3 165

3 700

37 593 364

3 425

4 003

3 896

chr07

28 617 404

2 447

2 764

35 028 021

2 577

2 907

2 918

chr08

35 439 739

2 876

3 458

44 889 171

3 034

3 623

3 489

chr09

34 148 863

2 602

3 110

41 306 725

2 752

3 318

3 157

chr10

33 665 772

2 677

3 157

37 674 811

2 775

3 229

3 155

chr11

25 514 024

2 257

2 679

27 954 350

2 205

2 614

2 521

chrUn_random

141 147 818

2 081

2 927

46 622 217

344

540

543

Mitochondrial

N/A

N/A

N/A

7 218 240

25

96

104

Total

472 960 417

30 716

36 550

450 848 473

30 674

36 154

35 276

  1. aNCBI RefSeq genome annotation released the 7 October 2014 and generated with the NCBI Eukaryotic Genome Annotation Pipeline
  2. bBanana Genome Hub (BGH) annotation performed by [27], in addition to manually curated genes performed before 08 December 2014 available in the Banana Genome Hub
  3. cIncluding ‘N’ separating scaffolds