Table 1 Comparison of the evidence-based (EB) protein coding gene model sets predicted here for the nuclear genomes of Micromonas pusilla (CCMP1545) and Micromonas commoda (RCC299) and the original model sets (“Catalog”) published in Worden et al. 2009 [6]
CCMP1545 EB set | Catalog CCMP1545 | RCC299 EB set | Catalog RCC299 | |
|---|---|---|---|---|
Protein coding genes (number) | 9895 | 10575 | 10307 | 10056 |
Average transcript length (nt) | 1799 | 1390 | 1808 | 1497 |
Average coding length (nt) | 1653 | 1317 | 1663 | 1419 |
Introns (number) | 11229 | 9531 | 5418 | 5650 |
Average intron length (nt) | 180 | 187 | 152 | 163 |
Exons (number) | 21060 | 20106 | 15651 | 15706 |
Average exon length (nt) | 840 | 731 | 1182 | 958 |
Spliced genes (number) | 5666 | 5311 | 3584 | 3688 |
Exons per multiple-exon gene | 2.98 | 2.79 | 2.51 | 2.54 |
Total intergenic bases (Mb) | 2.3 | n.c. | 1.7 | n.c. |
Total exonic bases (Mb) | 17.6 | n.c. | 17.4 | n.c. |
Total intronic bases (Mb) | 0.20 | n.c. | 0.78 | n.c. |
GC splice donors (%) | 25.60 | 5.90 | 1.50 | 0.70 |