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Table 1 Biased retention of cis-elements enriched in light-responsive genes between maize1 and maize2

From: Regulatory modules controlling early shade avoidance response in maize seedlings

Shade-induced gene pairs Shade-repressed gene pairs
ID maize1 maize2 ID maize1 maize2
p.value motif. prop p.value motif. prop p.value motif. prop p.value motif. prop
Evening Elementa 2.55E-06 0.200 2.99E-03 0.099 HSEsa 1.18E-03 0.133 9.15E-01 0.012
FUS3a 9.19E-04 0.152 9.93E-01 0.034 ABFsa 4.60E-03 0.117 2.63E-01 0.058
SORLREP3a 7.70E-03 0.168 1.00E + 00 0.017 PIL5b 3.83E-01 0.042 7.01E-05 0.140
CDC5b 3.68E-01 0.032 2.03E-03 0.144 EmBP-1b 1.77E-01 0.025 1.92E-05 0.116
FR-induced gene pairs FR-repressed gene pairs
ID maize1 maize2 ID maize1 maize2
p.value motif. prop p.value motif. prop p.value motif. prop p.value motif. prop
Z-boxa 7.34E-04 0.106 4.17E-01 0.025 CBF2b 1.31E-01 0.043 2.79E-03 0.118
AGL3a 3.49E-03 0.114 9.29E-01 0.042 GBF1/2/3b 1.31E-01 0.043 2.79E-03 0.118
ABRE-likea 3.71E-04 0.106 2.42E-02 0.051 DPBF1/2b 5.06E-01 0.029 5.64E-03 0.129
PIF4a 5.40E-04 0.136 1.21E-02 0.068 PIF5b 9.22E-01 0.058 7.23E-03 0.165
BZR1a 7.26E-03 0.136 1.23E-01 0.068 PIF3b 9.30E-01 0.029 5.25E-03 0.118
CCA1b 4.57E-01 0.098 4.85E-03 0.237      
  1. asignificantly higher enrichment in maize1 than in maize2. bsignificantly higher enrichment in maize2 than in maize1