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Table 1 Biased retention of cis-elements enriched in light-responsive genes between maize1 and maize2

From: Regulatory modules controlling early shade avoidance response in maize seedlings

Shade-induced gene pairs

Shade-repressed gene pairs

ID

maize1

maize2

ID

maize1

maize2

p.value

motif. prop

p.value

motif. prop

p.value

motif. prop

p.value

motif. prop

Evening Elementa

2.55E-06

0.200

2.99E-03

0.099

HSEsa

1.18E-03

0.133

9.15E-01

0.012

FUS3a

9.19E-04

0.152

9.93E-01

0.034

ABFsa

4.60E-03

0.117

2.63E-01

0.058

SORLREP3a

7.70E-03

0.168

1.00E + 00

0.017

PIL5b

3.83E-01

0.042

7.01E-05

0.140

CDC5b

3.68E-01

0.032

2.03E-03

0.144

EmBP-1b

1.77E-01

0.025

1.92E-05

0.116

FR-induced gene pairs

FR-repressed gene pairs

ID

maize1

maize2

ID

maize1

maize2

p.value

motif. prop

p.value

motif. prop

p.value

motif. prop

p.value

motif. prop

Z-boxa

7.34E-04

0.106

4.17E-01

0.025

CBF2b

1.31E-01

0.043

2.79E-03

0.118

AGL3a

3.49E-03

0.114

9.29E-01

0.042

GBF1/2/3b

1.31E-01

0.043

2.79E-03

0.118

ABRE-likea

3.71E-04

0.106

2.42E-02

0.051

DPBF1/2b

5.06E-01

0.029

5.64E-03

0.129

PIF4a

5.40E-04

0.136

1.21E-02

0.068

PIF5b

9.22E-01

0.058

7.23E-03

0.165

BZR1a

7.26E-03

0.136

1.23E-01

0.068

PIF3b

9.30E-01

0.029

5.25E-03

0.118

CCA1b

4.57E-01

0.098

4.85E-03

0.237

     
  1. asignificantly higher enrichment in maize1 than in maize2. bsignificantly higher enrichment in maize2 than in maize1