Fine mapping and RNA-Seq unravels candidate genes for a major QTL controlling multiple fiber quality traits at the T1 region in upland cotton

Table 3 Summary of sequence assembly after Illumina sequencing

Sample name	Raw reads	Clean reads	Clean bases	Error rate (%)	Q20 (%)	Q30 (%)	GC content (%)
R118_0	10144830	9985483	0.5G	0.01	97.94	94.16	43.74
Yumian 1_0	11213370	11081107	0.55G	0.01	98.01	94.35	43.77
R118_5	14141978	14104947	0.71G	0.01	99.03	96.58	44.01
Yumian 1_5	14027353	13969205	0.7G	0.01	98.99	96.49	43.94

Raw reads: Statistical data for the original sequences. Clean reads: Calculation method is the same as for raw reads, but the statistics file is the filtered data. Clean bases:sequence number*sequence length (transformed into G bases). Q20、Q30:Percentage of the number of bases of Phred score greater than 20, 30 respectively. GC content:Percentage of G and C bases among the total base number

ISSN: 1471-2164