Table 2 Identification of variants with high effect on protein structure in genes for stallion fertility

g.26775767G>C

ss1457622628

NEURL1

Exon 5

Stop gained

p.S155*

g.77472655G>C

ss1457622630

KDR

Intron 30

Splice site donor

g.74610774C>T

ss1457622632

CFTR

Exon 17

Stop gained

p.Q894*

g.56937215C>T

ss1457622634

OVGP1

Exon 6

Stop gained

p.R145*

g.45985131A>G

ss1457622636

FBXO43

Exon 1

Start lost

p.M1T

g.82699661C>T

ss1457622637

TSSK6

Exon 3

Stop gained

p.W155*

g.7083659A>T

ss1457622638

SLC9A3R1

Splice site intron 9

Splice site donor

g.40694339G>A

ss1457622640

PKD1

Exon 17

Stop gained

p.W339*

g.6704968C>T

ss1457622641

GHRL

Splice site intron 1

Splice site acceptor

g.19034281C>T

ss1457622642

FOXP1

Splice site intron 4

Splice site donor

g.21894180G>A

ss1457622643

FNDC3A

Splice site intron 27

Splice site acceptor

g.32635273T>C

ss1457622644

BTNL2

Exon 1

Start lost

p.M1T

g.35255390T>C

ss1457622645

TCP11

Exon 1

Start lost

p.M1T

g.4323852G>A

ss1457622646

SPATA31E1

Exon 3

Stop gained

p.R423*

g.37453246G>C

ss1457622647

NOTCH1

Splice site intron 4

Splice site acceptor

g.37455302G>A

ss1457622648

NOTCH1

Splice site intron 14

Splice site donor

g.79813487A>T

ss1457622631

ENSECAG00000020135

n.a.

Splice site acceptor,

Splice site donor

g.25184403G>C

ss1457622635

ENSECAG00000021286

n.a.

Splice site donor

g.30073089G>A

ss1457622639

ENSECAG00000018118

n.a.

Splice site donor