Table 1 Evaluation of the pipeline accuracy for each TF family for plant TFs. A sensitivity value less than one means inclusion of false negatives, and a PPV value less than one means inclusion of false positives
From: Transcription factors in microalgae: genome-wide prediction and comparative analysis
A. thaliana | Â | Â | Â | |
|---|---|---|---|---|
|  | This study | Riaño-Pachón et al., 2007 [24] | ||
TF family | sensitivity | PPV | sensitivity | PPV |
AP2/ERF | 169/169 = 1 | 169/169 = 1 | 0.99 | 1 |
ARF | 37/37 = 1 | 37/37 = 1 | 0.91 | 0.95 |
bZIP | 127/127 = 1 | 127/127 = 1 | 0.92 | 0.97 |
C2C2-Dof | 47/47 = 1 | 47/47 = 1 | 0.97 | 0.97 |
C2C2-GATA | 41/41 = 1 | 41/41 = 1 | 1 | 1 |
GARP | 85/85 = 1 | 85/85 = 1 | NA | NA |
GRAS | 37/37 = 1 | 37/37 = 1 | 0.97 | 0.97 |
MADS | 145/146 = 0.99 | 145/145 = 1 | 0.92 | 0.95 |
NAC | 138/138 = 1 | 138/138 = 1 | 1 | 0.99 |
WRKY | 90/90 = 1 | 90/90 = 1 | 0.99 | 0.99 |
bHLH | 225/225 = 1 | 224/225 = 0.99 | 0.80 | 0.92 |