Table 1 List of predicted genes involved in bacterial endophytic behavior [38] in Serratia sp. LCN16 genome. Burkholderia phytofirmans PsJN (CP001052-54) was used as reference genome for orthologous search in Serratia sp. LCN16, Serratia proteamaculans 568 (Spro568, NC_009832) and S. liquefaciens ATCC 27592 (CP006252). The description presented is based on KEGG annotation [69]

Transporter

Arabinose operon regulatory

LCN16_02277

1

araC

Bphyt_0033

Spro_1385

M495_06380

Lysine exporter protein

LCN16_04024

1

Bphyt_0034

-

M495_06375

High-affinity branched-chain amino acid transport

LCN16_00248

1

livF

Bphyt_3906

Spro_0232

M495_01020

High-affinity branched-chain amino acid transport

LCN16_00245

1

livH

Bphyt_3908

Spro_3202

M495_01005

NAD(P) transhydrogenase subunit beta

LCN16_02610

1

pntB

Bphyt_4261

Spro_2584

M495_12845

ABC transporter related

LCN16_02535

1

malk_1

Bphyt_4584

Spro_4470

M495_22510

Metabolite:H+ symporter (MHS) family

LCN16_03836

1

citA

Bphyt_5520

Spro_3179

M495_10135

Extracellular solute-binding protein

LCN16_01236

1

modA

Bphyt_5521

Spro_3180

-

Gluconate 2-dehydrogenase

LCN16_02150

1

Bphyt_4638

Spro_2138

M495_10390

Gluconate 2-dehydrogenase

LCN16_02151

1

Bphyt_4639

Spro_2137

M495_10385

Gluconate 2-dehydrogenase

LCN16_02152

1

Bphyt_4640

Spro_2136

M495_10380

Secretion and delivery system

TypeVI secretion protein

-

0

-

Bphyt_4913

Spro_3003

-

TypeVI secretion protein

-

0

-

Bphyt_4914

Spro_3004

-

TypeVI secretion protein

-

0

-

Bphyt_4919

Spro_3013

M495_03685

RND family efflux transporter MFP subunit

LCN16_01039

1

acrA

Bphyt_6992

Spro_1127

M495_04880

Plant polymer degradation/modification

Alpha/beta hydrolase family protein

LCN16_01434

1

Bphyt_6134

Spro_0990

M495_12205

Alpha/alpha-trehalase

-

0

Bphyt_5350

-

-

Cupin

LCN16_02559

2

Bphyt_2288

-

-

Peptidase M48 Ste24p

LCN16_04051

1

loiP

Bphyt_3335

Spro_3955

M495_20655

Transcriptional regulator

HTH-type transcriptional regulator LrpC

LCN16_01418

1

lrpC

Bphyt_0434

Spro_1462

M495_06820

Regulator protein FrmR

LCN16_01244

1

frmR

Bphyt_0109

-

-

AraC family transcriptional regulator

LCN16_02277

1

araC

Bphyt_2287

Spro_2540

M495_12625

Transcriptional regulatory protein

LCN16_03523

1

ompR

Bphyt_4604

Spro_4621

M495_23305

Transcriptional regulatory, DeoR family

LCN16_01600

1

deoR

Bphyt_4951

Spro_2259

M495_11240

Transcriptional regulatory, LysR family

LCN16_02297

1

ampR

Bphyt_5523

Spro_3181

M495_17720

LrgB family operon

-

0

Bphyt_5345

Spro_1569

M495_07365

Flavoprotein WrbA

LCN16_01736

1

wrbA

Bphyt_6351

Spro_1813

M495_08400

Detoxification

Glutathione S-transferase

LCN16_01390

7

gst

Bphyt_1366

Spro_3320

M495_17060

Short-chain dehydrogenase

LCN16_02779

1

Bphyt_1098

Spro_1971

M495_09250

S-(hydroxymethyl)-gluthathione dehydrogenase

LCN16_01515

1

frmA

Bphyt_5114

Spro_1557

M495_07305

2-hydropantoate 2-reductase

LCN16_00995

1

panE

Bphyt_5159

Spro_3174

-

Redox potential maintenance

Acetoacetyl-coa reductase

LCN16_01349

1

phbB

Bphyt_5655

Spro_3465

M495_17855

Acetaldehyde dehydrogenase

LCN16_02742

1

adhE

Bphyt_1467

Spro_3026

M495_05210

Carbonate dehydratase

LCN16_00514

1

cynT

Bphyt_2146

Spro_1534

M495_07235

Aldehyde dehydrogenase

LCN16_02563

3

gabD

Bphyt_4023

Spro_4305

M495_21680

Malate/L-lactate dehydrogenase

LCN16_02031

1

ybiC

Bphyt_5456

Spro_2010

M495_09840

3-hydroxyisobutyrate dehydrogenase

LCN16_01348

1

garR

Bphyt_5931

Spro_1492

M495_07025

Others

Amino-acid metabolite efflux pump

LCN16_01419

1

eamA

Bphyt_0435

Spro_1463

M495_06825

2-isopropylmalate synthase

LCN16_00673

2

leuA

Bphyt_0573

Spro_1875

M495_00910

Diaminopimelate decarboxylase

LCN16_03946

1

lysA

Bphyt_7089

Spro_3836

M495_20025