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Table 1 Statistics of S. incanum and S. aethiopicum assembled transcripts and unigenes, using Trinity software

From: Transcriptome analysis and molecular marker discovery in Solanum incanum and S. aethiopicum, two close relatives of the common eggplant (Solanum melongena) with interest for breeding

  

S. incanum

S. aethiopicum

Raw reads

105,625,594

114,162,500

 

Sequence lenght

101

101

 

Mean sequence quality (Phred Score)

36.03

36.02

 

%CG

43

43

High-quality reads

91,579,142

99,012,712

 

Sequence lenght

70-101

70-101

 

Mean sequence quality (Phred Score)

36.88

36.87

 

%CG

42

42

Transcript

108,322

106,660

 

Max lenght

12,202

12,179

 

Avarage lenght

946

868

 

N50

1,693

1,455

 

Total residues

102,496,435

92,629,886

Unigenes

83,905

87,084

 

Max lenght

12,181

12,159

 

Avarage lenght

696

722

 

N50

1,153

1,139

 

Total residues

58,447,674

62,899,378

  1. Data correspond to the results of RNA-Seq projects by HiSeq 2000 sequencer (Illumina) of total RNA from three tissues of S. incanum and S. aethiopicum and subsequent processing