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Table 3 SSRs statistics corresponding to the S. incanum and S. aethiopicum transcriptomes

From: Transcriptome analysis and molecular marker discovery in Solanum incanum and S. aethiopicum, two close relatives of the common eggplant (Solanum melongena) with interest for breeding

 

S. incanum

S. aethiopicum

SSRs repeat motifs

SSRs

%

Unigenes

SSRs

%

Unigenes

Dinucleotide

260

26.6

258

362

29.0

342

 

AG/CT

160

61.5

 

187

51.7

 
 

AT/TA

63

24.2

 

98

27.1

 
 

AC/GT

36

13.8

 

76

20.9

 
 

CG/GC

1

0.3

 

1

0.3

 

Trinucleotide

621

63.6

609

776

62.2

755

 

AAG/CTT

169

27.2

 

263

33.8

 
 

AAC/GTT

145

23.3

 

173

22.2

 
 

AAT/ATT

82

13.2

 

106

13.7

 
 

ATC/GAT

73

11.7

 

63

8.1

 
 

AGG/CCT

53

8.5

 

54

7.0

 
 

ACC/GGT

39

6.2

 

41

5.3

 
 

AGC/GCT

34

5.4

 

40

5.2

 
 

CCG/CGG

12

1.9

 

17

2.2

 
 

ACT/AGT

10

1.6

 

10

1.3

 
 

ACG/CGT

4

0.6

 

9

1.2

 

Tetranucleotide

95

9.8

93

110

8.8

110

 

AAAG/CTTT

29

30.5

 

36

32.7

 
 

AAAT/TTTA

23

24.2

 

28

25.5

 
 

AAAC/GTTT

10

10.5

 

5

4.5

 
 

ACAT/ATGT

5

5.2

 

9

8.2

 
 

AAGG/CCTT

4

4.2

 

3

2.8

 
 

ATCC/GGAT

4

4.2

 

1

0.9

 
 

AACC/GGTT

3

3.1

 

4

3.6

 
 

AATG/CATT

3

3.1

 

2

1.8

 
 

AATT/AATT

3

3.1

 

6

5.5

 
 

AGGG/CCCT

3

3.1

 

1

0.9

 
 

Others motifs

8

8.4

 

15

13.6

 

Total

976

 

954

1,248

 

1,270

  1. Di-, tri- and tetranucleotide repeats and motifs identified in the S. incanum and S. aethiopicum assembled unigenes are indicated
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BMC Genomics

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