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Table 4 SSRs localization in the S. incanum and S. aethiopicum transcriptomes

From: Transcriptome analysis and molecular marker discovery in Solanum incanum and S. aethiopicum, two close relatives of the common eggplant (Solanum melongena) with interest for breeding

S. incanum

di-SSRs

tri-SSRs

tetra-SSRs

Total

  

%

%

%

%

 

5′-UTR

63

42.2

66

44.3

20

13.5

149

15.2

 

ORF

25

7.6

291

88.7

11

3.7

327

33.5

 

3′-UTR

40

28.8

83

59.7

16

11.5

139

14.2

 

Other

132

36.5

181

50.1

48

13.4

361

37.1

 

Total

260

26.6

621

63.6

95

9.8

976

100

S. aethiopicum

di-SSRs

tri-SSRs

tetra-SSRs

Total

  

%

%

%

%

 

5′-UTR

74

43.0

75

43.6

23

13.4

172

13.8

 

ORF

29

7.1

358

87.8

21

5.1

408

32.7

 

3′-UTR

73

38.0

106

52.3

13

6.7

192

15.3

 

Other

186

39.0

237

49.8

53

11.2

476

38.2

 

Total

362

29.0

776

62.2

110

8.8

1,248

100

  1. The SSRs detected in the transcriptomes were checked for their position in the unigenes (ORF, 5′UTR and 3′UTR) according to the nucleotide repeats. When no precise position was established the SSRs were defined as “Other”