Skip to main content

Table 4 SSRs localization in the S. incanum and S. aethiopicum transcriptomes

From: Transcriptome analysis and molecular marker discovery in Solanum incanum and S. aethiopicum, two close relatives of the common eggplant (Solanum melongena) with interest for breeding

S. incanum di-SSRs tri-SSRs tetra-SSRs Total
   N° % N° % N° % N° %
  5′-UTR 63 42.2 66 44.3 20 13.5 149 15.2
  ORF 25 7.6 291 88.7 11 3.7 327 33.5
  3′-UTR 40 28.8 83 59.7 16 11.5 139 14.2
  Other 132 36.5 181 50.1 48 13.4 361 37.1
  Total 260 26.6 621 63.6 95 9.8 976 100
S. aethiopicum di-SSRs tri-SSRs tetra-SSRs Total
   N° % N° % N° % N° %
  5′-UTR 74 43.0 75 43.6 23 13.4 172 13.8
  ORF 29 7.1 358 87.8 21 5.1 408 32.7
  3′-UTR 73 38.0 106 52.3 13 6.7 192 15.3
  Other 186 39.0 237 49.8 53 11.2 476 38.2
  Total 362 29.0 776 62.2 110 8.8 1,248 100
  1. The SSRs detected in the transcriptomes were checked for their position in the unigenes (ORF, 5′UTR and 3′UTR) according to the nucleotide repeats. When no precise position was established the SSRs were defined as “Other”
Back to article page

BMC Genomics

ISSN: 1471-2164

Contact us