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Table 4 The identified candidate genes involved in various flowering pathways of radish

From: De novo transcriptome analysis in radish (Raphanus sativus L.) and identification of critical genes involved in bolting and flowering

Gene name Number of unigenes Flowering pathway
ABH1/ENS 1 Photoperiod
AGL12 1 Others
AGL14 1 Others
AGL15 2 Photoperiod
AGL16 1 Others
AGL18 3 Photoperiod
AGL19 2 Vernalization
AGL24 2 Photoperiod
AGL6 7 Photoperiod
AGL8/FUL 4 Photoperiod
AP1 5 Photoperiod
AP2 6 Photoperiod
AP3 3 Photoperiod
ARP4 3 Photoperiod
ARP6 1 Vernalization
ARR3 2 Photoperiod
ATH1 3 flower development
ATX1 6 flower development
CBF1 1 Vernalization
CBF2 1 Vernalization
CCA1 3 Photoperiod/Circadian clock
CCR2 3 Autonomous
CDF1 5 Photoperiod
CDF2 1 Photoperiod
CDF3 1 Photoperiod
CO 3 Photoperiod/Circadian clock
COL1 2 Photoperiod/Circadian clock
COL2 1 Photoperiod/Circadian clock
COL3 1 Photoperiod
COL4 3 Photoperiod
COL5 4 Photoperiod
COL9 2 Photoperiod/Circadian clock
COP1 1 Photoperiod
CRY1 4 Photoperiod/Circadian clock
CRY2 1 Photoperiod/Circadian clock
CSTF64 2 Vernalization
CSTF77 4 Vernalization
DDF1 7 GA
DDF2 2 GA
DDL 1 flower development
EBS 3 Photoperiod
EFS 2 flower development
ELF3 6 Photoperiod/Circadian clock
ELF4 1 Photoperiod/Circadian clock
ELF5 1 Photoperiod
ELF6 1 Photoperiod
ELF7 2 Photoperiod
ELF8 1 Photoperiod
ELF9 1 Photoperiod
EMF1 1 Vernalization
ESD4 1 Vernalization
FCA 2 Autonomous
FD 4 Photoperiod
FES1 2 Vernalization
FIE 3 others
FIP1 2 Vernalization
FIP2 1 Vernalization
FLC 3 integrator
FLD 1 Autonomous
FLK 4 Autonomous
FLM/MAF1 1 Photoperiod
FLP1 1 flower development
FPA 3 Autonomous
FPF1 1 GA
FRI 1 Vernalization
FT 1 integrator
FVE/MSI4 7 Autonomous
FY 1 Autonomous
GA3 1 GA
GAI 2 GA
GI 5 Photoperiod/Circadian clock
GID1A 2 GA
GID1B 4 GA
GID1C 2 GA
GNC 2 GA
GNL 2 GA
HUA2 5 Vernalization
HYL1/DRB1 2 others
LCL1 3 Photoperiod/Circadian clock
LD 4 Autonomous
LDL2 1 flower development
LFY 3 integrator
LHP1 3 Vernalization
LHY 2 Photoperiod/Circadian clock
LKP2 3 Photoperiod/Circadian clock
LWD1/ATAN11 1 Photoperiod/Circadian clock
LWD2 1 Photoperiod/Circadian clock
MBD9 6 Photoperiod
MYB33 2 GA
MYB65 3 GA
NF-YA1/HAP2A 1 Photoperiod
NF-YA4 3 Photoperiod
NF-YB1 2 Photoperiod
NF-YB2 3 Photoperiod
pEARLI 2 Vernalization
PHYA 2 Photoperiod/Circadian clock
PHYB 2 Photoperiod/Circadian clock
PHYC 3 Photoperiod/Circadian clock
PHYD 1 Photoperiod/Circadian clock
PHYE 9 Photoperiod/Circadian clock
PI 2 flower development
PIE1 4 Photoperiod
PRC2/CLF/EMF2 5 Vernalization
PRR3 3 Photoperiod/Circadian clock
PRR7 7 Photoperiod/Circadian clock
PRR9 1 Photoperiod/Circadian clock
REF6 6 Vernalization
RGA 2 GA
RGL1 2 GA
RGL2 1 GA
SDG10/SWN 2 Vernalization
SEP1/AGL2 4 Others
SEP2/AGL4 4 Others
SEP3/AGL9 6 flower development
SHP1/AGL1 3 flower development
SHP2/AGL5 3 flower development
SKB1 2 Vernalization
SOC1/AGL20 2 integrator
SPA 9 Photoperiod
SPL 2 Age
SPL3 4 Age
SPL5 2 Age
SPL9 4 Age
SPY 3 GA
SUF4 8 Vernalization
SVP/AGL22 3 Vernalization
TEM1 6 Photoperiod
TEM2 7 Photoperiod
TFL2 3 Photoperiod
TIC 10 Photoperiod/Circadian clock
TOE1 3 Photoperiod
TOE2 2 Photoperiod
TOE3 3 Photoperiod
TPS1 4 Others
VEL1 2 Photoperiod
VIN3 1 Vernalization
VIP1 2 Vernalization
VIP2 2 Vernalization
VRN1 9 Vernalization
VRN2 2 Vernalization
WNK1 3 Photoperiod/Circadian clock