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Table 3 Predicted mRNA targets of upregulated, differentially expressed microRNAs (orthologous and putative novel)

From: Differential expression of conserved and novel microRNAs during tail regeneration in the lizard Anolis carolinensis

Regenerating tissue source Upregulated, differentially expressed microRNA Predicted gene targets
regenerating tail tip aca-miR-184 adprhl2, anpep, ar, b3gnt1, bai2, ccar1, ccdc50, cdkn2c, cox4i2, depdc5, fam160a2, gpi, h6pd, kars, limk1, me1, ncan, nek6, oxnad1, pcsk4, pdia3, pdpk1, phlda1, ring1, rtn2, slc30a2, slc43a1, suclg1, sugp2, tgfb1, tmem214, usp21, xxylt1, G.11044, G.14682, G.15668, G.19327, G.19921, G.20484, G.21669, G.21917, G.21923, G.22240, G.22349, G.22365, G.22632
regenerating tail tip aca-miR-2188 aaas, b3gnt7, crtac1, grm7, hsf1, hsp90b1, itpkb, itsn1, mta1, mylk2, nmnat3, pou2f2, tpd52, zbtb45, G.1698, G.6382
regenerating tail base 1_16347 (putative novel) abcf3, adhfe1, amn1, c11orf35, cep76, chrna4, ddit4, dmtn, dpy30, dpysl3, fam57a, ikzf3, jarid2, lrrc4b, moxd1, mtpap, nmnat2, pfdn4, rps6kl1, scarf2, smpd2, sox13, sws2, tlk2, tpt1, tpx2, trmt1, G.11229, G.11992, G.14528, G.16037, G.19728, G.19926, G.4056
regenerating tail base 5_10675 (putative novel) adam33, ap1b1, arhgef33, ccdc104, efcab4a, fermt2, ggt1, klhl38, ncoa4, nkd1, pipox, plxna4, ppfia4, psmc6, psmf1, rgs18, sall1, sdf2l1, traf3ip3, trim65, txlna, zfyve1, G.11978, G.20962, G.21441, G.4400
regenerating tail base aca-miR-1b efhd1, irak4, sema4c, slain2, snai2, tktl1, G.22875, G.9382
regenerating tail base aca-miR-206 ankrd17, c5orf30, cd44, cep192, chrac1, gbe1, notch3, poldip3, G.14293, G.4173, G.9382
regenerating tail base GL343237.1_6814 (putative novel) ddb2, elmsan1, irf7, kank4, kifap3, klhdc3, ldb2, map1lc3b, nfia, orc4, ppp1r9b, ptprh, secisbp2, swap70, vash2, znf385c, G.12700, G.2381, G.3078, G.4859
regenerating tail base aca-miR-1a-1; aca-miR-1a-2 ankrd17, efhd1, gbe1, ikbkap, irak4, pdgfa, sema4c, slain2, snai2, tktl1, G.14293, G.9382
regenerating tail base aca-miR-133a-1; aca-miR-133b abcf3, adhfe1, amn1, arhgdia, c10orf12, c11orf35, cacna1b, cep76, cfdp1, chrna4, col1a1, creld1, ddit4, dmtn, dpy30, dpysl3, fam57a, gria1, gtpbp1, ikzf3, lrrc4b, moxd1, mtpap, nmnat2, pfdn4, ppapdc2, rps6kl1, scarf2, smpd2, sox13, tm2d3, tpt1, tpx2, trmt1, vcp, G.10949, G.11229, G.11992, G.14528, G.16037, G.19284, G.19728, G.19926, G.3656, G.4056, G.5104