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Table 3 Predicted mRNA targets of upregulated, differentially expressed microRNAs (orthologous and putative novel)

From: Differential expression of conserved and novel microRNAs during tail regeneration in the lizard Anolis carolinensis

Regenerating tissue source

Upregulated, differentially expressed microRNA

Predicted gene targets

regenerating tail tip

aca-miR-184

adprhl2, anpep, ar, b3gnt1, bai2, ccar1, ccdc50, cdkn2c, cox4i2, depdc5, fam160a2, gpi, h6pd, kars, limk1, me1, ncan, nek6, oxnad1, pcsk4, pdia3, pdpk1, phlda1, ring1, rtn2, slc30a2, slc43a1, suclg1, sugp2, tgfb1, tmem214, usp21, xxylt1, G.11044, G.14682, G.15668, G.19327, G.19921, G.20484, G.21669, G.21917, G.21923, G.22240, G.22349, G.22365, G.22632

regenerating tail tip

aca-miR-2188

aaas, b3gnt7, crtac1, grm7, hsf1, hsp90b1, itpkb, itsn1, mta1, mylk2, nmnat3, pou2f2, tpd52, zbtb45, G.1698, G.6382

regenerating tail base

1_16347 (putative novel)

abcf3, adhfe1, amn1, c11orf35, cep76, chrna4, ddit4, dmtn, dpy30, dpysl3, fam57a, ikzf3, jarid2, lrrc4b, moxd1, mtpap, nmnat2, pfdn4, rps6kl1, scarf2, smpd2, sox13, sws2, tlk2, tpt1, tpx2, trmt1, G.11229, G.11992, G.14528, G.16037, G.19728, G.19926, G.4056

regenerating tail base

5_10675 (putative novel)

adam33, ap1b1, arhgef33, ccdc104, efcab4a, fermt2, ggt1, klhl38, ncoa4, nkd1, pipox, plxna4, ppfia4, psmc6, psmf1, rgs18, sall1, sdf2l1, traf3ip3, trim65, txlna, zfyve1, G.11978, G.20962, G.21441, G.4400

regenerating tail base

aca-miR-1b

efhd1, irak4, sema4c, slain2, snai2, tktl1, G.22875, G.9382

regenerating tail base

aca-miR-206

ankrd17, c5orf30, cd44, cep192, chrac1, gbe1, notch3, poldip3, G.14293, G.4173, G.9382

regenerating tail base

GL343237.1_6814 (putative novel)

ddb2, elmsan1, irf7, kank4, kifap3, klhdc3, ldb2, map1lc3b, nfia, orc4, ppp1r9b, ptprh, secisbp2, swap70, vash2, znf385c, G.12700, G.2381, G.3078, G.4859

regenerating tail base

aca-miR-1a-1; aca-miR-1a-2

ankrd17, efhd1, gbe1, ikbkap, irak4, pdgfa, sema4c, slain2, snai2, tktl1, G.14293, G.9382

regenerating tail base

aca-miR-133a-1; aca-miR-133b

abcf3, adhfe1, amn1, arhgdia, c10orf12, c11orf35, cacna1b, cep76, cfdp1, chrna4, col1a1, creld1, ddit4, dmtn, dpy30, dpysl3, fam57a, gria1, gtpbp1, ikzf3, lrrc4b, moxd1, mtpap, nmnat2, pfdn4, ppapdc2, rps6kl1, scarf2, smpd2, sox13, tm2d3, tpt1, tpx2, trmt1, vcp, G.10949, G.11229, G.11992, G.14528, G.16037, G.19284, G.19728, G.19926, G.3656, G.4056, G.5104