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Table 3 Frequency of SSRs in Poa pratensis

From: Identification of candidate genes involved in wax deposition in Poa pratensis by RNA-seq

Motif length

Repeat numbers

5

6

7

8

9

10

>10

Total (%)

perfect_SSR_1

-

-

-

-

-

588

444

1032 (33.43 %)

perfect_SSR_2

-

239

82

46

22

10

13

412 (13.35 %)

perfect_SSR_3

1042

280

97

13

-

-

-

1432 (46.39 %)

perfect_SSR_4

25

4

-

-

-

-

-

29 (0.94 %)

perfect_SSR_5

7

1

-

-

-

-

-

8 (0.26 %)

perfect_SSR_6

5

-

-

-

-

-

-

5 (0.16 %)

compound_SSR

-

-

-

-

-

-

-

157 (5.09 %)

compound_SSR*

-

-

-

-

-

-

-

12 (0.39 %)

Total SSR

1079

524

179

59

22

598

457

3087

  1. Perfect_SSR_1, SSR_2, SSR_3, SSR_4, SSR_5, and SSR_6 represent mono-, di-, tri-, tetra-, penta-, and hexa-nucleotide repeat, respectively. Compound _SSR represents compound of two or more motifs. *uncertain SSR resulted from the compound
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BMC Genomics

ISSN: 1471-2164

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