Fig. 6From: Genomic analysis of the multi-host pathogen Erysipelothrix rhusiopathiae reveals extensive recombination as well as the existence of three generalist clades with wide geographic distributionRelationship among Clade 3 isolates. This maximum likelihood tree (mid-point rooted) was generated using PhyML based on the curated set of single nucleotide polymorphisms (SNPs) found to be outside recombinant segments as determined using Gubbins. Bootstrap values with >70Â % support are shown, in addition to support for clusters of isolates by PhyloPhlAn and fineSTRUCTUREBack to article page