Table 1 TE contribution of every order and superfamily (kb) to the D. buzzatii (st-1 and j-19 before and after the correction) and D. mojavensis genomes^a

2366.44

4693.31

1243.43

2050.57

9953.02

LTR Total

(17.38 %)

(26.03 %)

(19.54 %)

(17.62 %)

(33.46 %)

BelPao

435.35

1025.76

198.65

432.82

2255.95

Copia

309.80

522.62

162.75

275.82

718.71

ERVK

10.92

9.97

8.09

7.52

18.06

Gypsy

1610.37

3134.95

873.94

1334.42

6960.30

2541.65

3401.72

1551.05

2221.12

5977.29

LINE Total

(18.66 %)

(18.87 %)

(24.37 %)

(19.08 %)

(20.09 %)

CR1

396.35

761.48

117.39

546.88

947.96

I

74.63

136.15

20.19

38.59

110.53

Jockey

478.24

600.72

246.54

345.78

765.64

L1

6.71

6.01

6.70

5.63

8.08

L2

191.37

213.18

145.73

148.74

395.99

LOA

1.18

1.31

0.82

0.65

1.95

R1

1383.35

1663.22

1011.77

1133.23

3721.30

R2

1.49

9.30

0.51

0.38

23.03

R4

1.57

0.80

0.70

0.57

1.37

RTE

6.76

9.55

0.69

0.68

1.43

2016.98

2476.88

919.50

1820.64

2747.83

TIR Total

(14.81 %)

(13.74 %)

(14.46 %)

(15.64 %)

(9.24 %)

hAT

563.03

661.13

239.06

414.90

654.13

Mutator

21.00

16.32

16.14

14.05

22.73

Novosib

17.35

16.43

11.89

10.77

16.15

P

590.70

830.17

216.28

713.43

752.39

PIF/Harbinger

3.81

9.71

2.21

2.45

7.82

piggyBack

18.67

9.46

5.38

5.79

77.21

Tc1/mariner

407.93

507.35

186.38

363.43

534.42

Transib

281.27

115.97

172.40

211.64

627.54

TIR other

113.23

310.35

69.75

84.18

55.43

5531.01

6331.89

1950.81

4689.50

10083.94

Helitron

(40.61 %)

(35.12 %)

(30.65 %)

(40.29 %)

(33.90 %)

189.27

129.44

118.57

100.34

263.81

Maverick

(1.39 %)

(0.72 %)

(1.86 %)

(0.86 %)

(0.89 %)

0.24

0.11

0.67

0.40

0.19

Others

(0 %)

(0 %)

(0 %)

(0 %)

(0 %)

973.76

994.61

580.02

756.66c

721.26

Unknown

(7.15 %)

(5.52 %)

(9.11 %)

(6.50 %)

(2.42 %)

Total

13619.34

18027.96

6364.04

11639.23

29747.33