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Table 2 Genes involved in each process of cluster 5

From: Fungal and host transcriptome analysis of pH-regulated genes during colonization of apple fruits by Penicillium expansum

GO Term Gene id Genbank transcript id Description
Regulation of pH PEXP_046990 KGO39741 Sodium/calcium exchanger membrane region
  PEXP_043720 KGO39291 Alkali metal cation/H+ antiporter Nha1, C-terminal
  PEXP_009670 KGO49300 Cation/H+ exchanger
  PEXP_095400 KGO43638 Sodium/calcium exchanger membrane region
L-Arabinose metabolic process PEXP_023030 KGO42774 Glycoside hydrolase, superfamily
PEXP_071150 KGO40611 Alcohol dehydrogenase superfamily, zinc-type
PEXP_089320 KGO41720 Glycoside hydrolase, superfamily
Calcium ion transport PEXP_046990 KGO39741 Sodium/calcium exchanger membrane region
  PEXP_088420 KGO41618 ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter
  PEXP_095400 KGO43638 Sodium/calcium exchanger membrane region
  PEXP_050270 KGO42077 ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter
Kynurenine metabolic process PEXP_039010 KGO48037 putative cyclase
PEXP_045070 KGO39237 putative cyclase
PEXP_009350 KGO49268 Pyridoxal phosphate-dependent transferase, major region, subdomain 2
Glyoxylate cycle PEXP_011610 KGO49112 Malate synthase A
  PEXP_077890 KGO37773 Pyruvate/Phosphoenolpyruvate kinase
Tryptophan catabolic process PEXP_039010 KGO48037 Putative cyclase
PEXP_045070 KGO39237 Putative cyclase
PEXP_009350 KGO49268 Pyridoxal phosphate-dependent transferase, major region, subdomain 2
Inorganic ion transmembrane transport PEXP_059490 KGO45335 Sulfate anion transporter
PEXP_043720 KGO39291 Alkali metal cation/H+ antiporter Nha1, C-terminal
PEXP_048620 KGO39686 Nickel/cobalt transporter, high-affinity
  PEXP_009670 KGO49300 Cation/H+ exchanger
  PEXP_088420 KGO41618 ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter
  PEXP_095400 KGO43638 Sodium/calcium exchanger membrane region
  PEXP_050270 KGO42077 ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter
  PEXP_094650 KGO43563 Ammonium transporter
Disaccharide metabolic process PEXP_052570 KGO42305 Glycosyl transferase, family 20
PEXP_011870 KGO49138 Pectinesterase, catalytic
PEXP_069330 KGO46763 Glycoside hydrolase, family 61
  PEXP_011880 KGO49139 Glycoside hydrolase, family 28
  PEXP_066270 KGO46936 Hexokinase, N-terminal
  PEXP_053240 KGO42372 Glycoside hydrolase, family 61
  PEXP_107940 KGO41788 Alpha-amylase, C-terminal all beta
Substrate-specific transmembrane transporter activity PEXP_046990 KGO39741 Sodium/calcium exchanger membrane region
PEXP_059490 KGO45335 Sulfate anion transporter
PEXP_016910 KGO46049 Xanthine/uracil/vitamin C permease
  PEXP_043720 KGO39291 Alkali metal cation/H+ antiporter Nha1, C-terminal
  PEXP_052330 KGO42281 Major facilitator superfamily domain, general substrate transporter
  PEXP_033600 KGO39977 Amino acid/polyamine transporter I
  PEXP_094860 KGO43584 Major facilitator superfamily domain, general substrate transporter
  PEXP_068270 KGO46657 Nucleobase cation symporter-1, NCS1
  PEXP_006100 KGO36811 Major facilitator superfamily domain, general substrate transporter
  PEXP_086200 KGO40808 Amino acid/polyamine transporter I
  PEXP_003610 KGO37353 Major facilitator superfamily domain, general substrate transporter
  PEXP_043410 KGO39260 Major facilitator superfamily domain, general substrate transporter
  PEXP_048620 KGO39686 Nickel/cobalt transporter, high-affinity
  PEXP_006360 KGO36837 Major facilitator superfamily domain, general substrate transporter
  PEXP_000260 KGO44335 Amino acid/polyamine transporter I
  PEXP_072400 KGO48510 Major facilitator superfamily domain, general substrate transporter
  PEXP_009030 KGO48810 Na dependent nucleoside transporter
  PEXP_068910 KGO46721 Major facilitator superfamily domain, general substrate transporter
  PEXP_031270 KGO40312 Permease, cytosine/purine, uracil, thiamine, allantoin
  PEXP_009670 KGO49300 Cation/H+ exchanger
  PEXP_110420 KGO38764 ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter
  PEXP_095790 KGO43677 Major facilitator superfamily domain, general substrate transporter
  PEXP_048590 KGO39683 Amino acid/polyamine transporter I
  PEXP_104220 KGO36561 Cation/H+ exchanger
  PEXP_019490 KGO45826 C4-dicarboxylate transporter/malic acid transport protein
  PEXP_088420 KGO41618 ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter
  PEXP_076320 KGO37552 Major facilitator superfamily domain, general substrate transporter
  PEXP_001370 KGO37112 Major facilitator superfamily domain, general substrate transporter
  PEXP_084160 KGO41053 Amino acid/polyamine transporter I
  PEXP_095400 KGO43638 Sodium/calcium exchanger membrane region
  PEXP_050270 KGO42077 ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter
  PEXP_062420 KGO45644 General substrate transporter
  PEXP_022750 KGO42746 Major facilitator superfamily domain, general substrate transporter
  PEXP_068690 KGO46699 Major facilitator superfamily domain, general substrate transporter
  PEXP_034320 KGO40048 Arsenical pump membrane protein, ArsB
  PEXP_074940 KGO36159 Major facilitator superfamily domain, general substrate transporter
  PEXP_094650 KGO43563 Ammonium transporter
Solute:proton antiporter activity PEXP_046990 KGO39741 Sodium/calcium exchanger membrane region
  PEXP_043720 KGO39291 Alkali metal cation/H+ antiporter Nha1, C-terminal
  PEXP_009670 KGO49300 Cation/H+ exchanger
  PEXP_104220 KGO36561 Cation/H+ exchanger
  PEXP_095400 KGO43638 Sodium/calcium exchanger membrane region
Cation:cation antiporter activity PEXP_046990 KGO39741 Sodium/calcium exchanger membrane region
PEXP_043720 KGO39291 Alkali metal cation/H+ antiporter Nha1, C-terminal
  PEXP_104220 KGO36561 Cation/H+ exchanger
  PEXP_095400 KGO43638 Sodium/calcium exchanger membrane region
Metal ion binding PEXP_046510 KGO39177 Cytochrome P450, E-class, CYP52
  PEXP_036890 KGO35901 Transcription factor, fungi
  PEXP_084560 KGO41093 4-Hydroxyphenylpyruvate dioxygenase
  PEXP_055320 KGO44077 Polyketide synthase, enoylreductase
  PEXP_042410 KGO39400 Manganese/iron superoxide dismutase, C-terminal
  PEXP_072700 KGO48540 Annexin
  PEXP_089160 KGO41704 Terpenoid synthase
  PEXP_102680 KGO36423 Transcription factor, fungi
  PEXP_042010 KGO48399 Protein of unknown function DUF3468
  PEXP_011320 KGO49083 Zinc finger, C2H2
  PEXP_095680 KGO43666 Protein of unknown function DUF3468
  PEXP_050580 KGO42108 Cytochrome P450
  PEXP_059140 KGO45293 Polyketide synthase, enoylreductase
  PEXP_100050 KGO46448 Heavy metal-associated domain, HMA
  PEXP_103630 KGO36296 Urease accessory protein UreD
  PEXP_083550 KGO40992 Thiamine pyrophosphate enzyme, C-terminal TPP-binding
  PEXP_070880 KGO40584 Polyketide synthase, enoylreductase
  PEXP_027120 KGO42963 hypothetical protein
  PEXP_040610 KGO48229 Transcription factor, fungi
  PEXP_075350 KGO36016 Alpha-actinin
  PEXP_011040 KGO49055 Cytochrome P450, E-class, group I
  PEXP_005060 KGO36707 Transcription factor, fungi
  PEXP_070870 KGO40583 Aldehyde dehydrogenase, C-terminal
  PEXP_046450 KGO39171 Amidohydrolase 1
  PEXP_008360 KGO37036 4-Hydroxyphenylpyruvate dioxygenase
  PEXP_048620 KGO39686 Nickel/cobalt transporter, high-affinity
  PEXP_101160 KGO38158 Pectin lyase fold/virulence factor
  PEXP_022330 KGO42704 Transcription factor, fungi
  PEXP_058230 KGO38945 Alcohol dehydrogenase superfamily, zinc-type
  PEXP_053390 KGO42387 Polyketide synthase, enoylreductase
  PEXP_017020 KGO46060 Cytochrome P450
  PEXP_021500 KGO44639 Transcription factor, fungi
  PEXP_043440 KGO39263 Polyketide synthase, enoylreductase
  PEXP_102420 KGO36222 Protein of unknown function DUF3468
  PEXP_108970 KGO41891 Polyketide synthase, enoylreductase
  PEXP_095570 KGO43655 Transcription factor, fungi
  PEXP_088350 KGO41611 Transcription factor, fungi
  PEXP_056220 KGO38423 Cytochrome P450
  PEXP_099120 KGO46300 Hypothetical protein
  PEXP_028450 KGO43127 Transcription factor, fungi
  PEXP_110420 KGO38764 ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter
  PEXP_050400 KGO42090 Zinc finger, C2H2
  PEXP_088420 KGO41618 ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter
  PEXP_085230 KGO41160 Hypothetical protein
  PEXP_000560 KGO44365 Class II aldolase/adducin N-terminal
  PEXP_071150 KGO40611 Alcohol dehydrogenase superfamily, zinc-type
  PEXP_090470 KGO45017 Pyruvate carboxyltransferase
  PEXP_080790 KGO38063 hypothetical protein
  PEXP_026670 KGO42918 Transcription factor, fungi
  PEXP_084100 KGO41047 Transcription factor, fungi
  PEXP_102160 KGO38273 Casein kinase II, regulatory subunit
  PEXP_036970 KGO35909 Cytochrome P450, E-class, group I
  PEXP_032030 KGO39788 Hypothetical protein
  PEXP_089350 KGO41723 Transcription factor, fungi
  PEXP_005230 KGO36724 Transcription factor, fungi
  PEXP_057180 KGO44225 ATP adenylyltransferase, C-terminal
  PEXP_002560 KGO37249 Hypothetical protein
  PEXP_081210 KGO47322 ATP-grasp fold, subdomain 1
  PEXP_071070 KGO40603 Molybdenum cofactor synthesis C-terminal
  PEXP_095390 KGO43637 Transcription factor, fungi
  PEXP_054870 KGO44003 Transcription factor, fungi
  PEXP_042700 KGO39429 Hypothetical protein
  PEXP_036990 KGO35911 Ureohydrolase
  PEXP_041200 KGO48300 Transcription factor, fungi
  PEXP_050270 KGO42077 ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter
  PEXP_048130 KGO39637 Transcription factor, fungi
  PEXP_010010 KGO48952 Transcription factor, fungi
  PEXP_085290 KGO41166 Transcription factor, fungi
  PEXP_079380 KGO37922 Zinc finger, C2H2
  PEXP_057190 KGO44226 Thiamine pyrophosphate enzyme, C-terminal TPP-binding
  PEXP_069040 KGO46734 Cytochrome P450
  PEXP_007560 KGO36956 Zinc finger, C2H2
  PEXP_081220 KGO47323 Transcription factor, fungi
  PEXP_087170 KGO40934 Transcription factor, fungi
  PEXP_105830 KGO41509 Transcription factor, fungi
  PEXP_043140 KGO39473 Cytochrome P450
  PEXP_067370 KGO46568 hypothetical protein
  PEXP_073070 KGO48577 Exonuclease, RNase T/DNA polymerase III
  PEXP_051020 KGO42152 Amidohydrolase 1
  PEXP_061400 KGO45512 Hypothetical protein
  PEXP_101010 KGO38143 Glycoside hydrolase, family 71
  PEXP_043150 KGO39474 Terpenoid synthase
  PEXP_015320 KGO47645 ATP-grasp fold, subdomain 1
Pectate lyase activity PEXP_101160 KGO38158 Pectin lyase fold/virulence factor
  PEXP_080220 KGO38006 Pectate lyase, catalytic
Calcium ion transmembrane transporter activity PEXP_046990 KGO39741 Sodium/calcium exchanger membrane region
PEXP_088420 KGO41618 ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter
PEXP_095400 KGO43638 Sodium/calcium exchanger membrane region
  PEXP_050270 KGO42077 ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter
Sequence-specific DNA binding RNA polymerase II transcription factor activity PEXP_102680 KGO36423 Transcription factor, fungi
PEXP_042010 KGO48399 Protein of unknown function DUF3468
PEXP_095680 KGO43666 Protein of unknown function DUF3468
PEXP_040610 KGO48229 Transcription factor, fungi
PEXP_070870 KGO40583 Aldehyde dehydrogenase, C-terminal
PEXP_021500 KGO44639 Transcription factor, fungi
PEXP_102420 KGO36222 Protein of unknown function DUF3468
  PEXP_088350 KGO41611 Transcription factor, fungi
  PEXP_099120 KGO46300 Hypothetical protein
  PEXP_085230 KGO41160 Hypothetical protein
  PEXP_080790 KGO38063 Hypothetical protein
  PEXP_102160 KGO38273 Casein kinase II, regulatory subunit
  PEXP_032030 KGO39788 Hypothetical protein
  PEXP_005230 KGO36724 Transcription factor, fungi
  PEXP_057180 KGO44225 ATP adenylyltransferase, C-terminal
  PEXP_002560 KGO37249 Hypothetical protein
  PEXP_095390 KGO43637 Transcription factor, fungi
  PEXP_042700 KGO39429 Hypothetical protein
  PEXP_048130 KGO39637 Transcription factor, fungi
  PEXP_010010 KGO48952 Transcription factor, fungi
  PEXP_085290 KGO41166 Transcription factor, fungi
  PEXP_087170 KGO40934 Transcription factor, fungi
  PEXP_067370 KGO46568 Hypothetical protein
  PEXP_101010 KGO38143 Glycoside hydrolase, family 71
Hydrolase activity, hydrolyzing O-glycosyl compounds PEXP_000940 KGO44403 Protein of unknown function DUF2985
PEXP_044190 KGO39338 Aldolase-type TIM barrel
PEXP_049330 KGO39518 Glycoside hydrolase, family 35
  PEXP_023030 KGO42774 Glycoside hydrolase, superfamily
  PEXP_101680 KGO38226 Concanavalin A-like lectin/glucanases superfamily
  PEXP_023340 KGO42463 Glycoside hydrolase, family 43
  PEXP_070780 KGO40574 Glycoside hydrolase, family 31
  PEXP_072880 KGO48558 Glycoside hydrolase, superfamily
  PEXP_048880 KGO39711 Concanavalin A-like lectin/glucanases superfamily
  PEXP_069330 KGO46763 Glycoside hydrolase, family 61
  PEXP_011880 KGO49139 Glycoside hydrolase, family 28
  PEXP_089320 KGO41720 Glycoside hydrolase, superfamily
  PEXP_076310 KGO37551 Glycoside hydrolase, family 32
  PEXP_026640 KGO42915 Glycoside hydrolase, family 16, CRH1, predicted
  PEXP_057570 KGO44264 Glycoside hydrolase family 3
  PEXP_053240 KGO42372 Glycoside hydrolase, family 61
  PEXP_042140 KGO48412 Concanavalin A-like lectin/glucanase, subgroup
  PEXP_107940 KGO41788 Alpha-amylase, C-terminal all beta
ATPase activity, coupled to transmembrane movement of substances PEXP_023060 KGO42777 CDR ABC transporter
PEXP_050880 KGO42138 ABC transporter, integral membrane type 1
PEXP_110420 KGO38764 ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter
PEXP_040720 KGO48240 ABC transporter, integral membrane type 1
PEXP_071990 KGO40700 ABC transporter, integral membrane type 1
PEXP_088420 KGO41618 ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter
  PEXP_104880 KGO41412 ABC transporter, integral membrane type 1
  PEXP_050270 KGO42077 ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter
  PEXP_077310 KGO37715 CDR ABC transporter
  PEXP_086490 KGO40844 ABC transporter, integral membrane type 1
  PEXP_057530 KGO44260 ABC transporter, integral membrane type 1
4-Hydroxyphenylpyruvate dioxygenase activity PEXP_084560 KGO41093 4-Hydroxyphenylpyruvate dioxygenase
PEXP_008360 KGO37036 4-Hydroxyphenylpyruvate dioxygenase
Integral component of membrane PEXP_046990 KGO39741 Sodium/calcium exchanger membrane region
PEXP_024890 KGO42618 Major facilitator superfamily domain, general substrate transporter
PEXP_041670 KGO48366 Major facilitator superfamily domain, general substrate transporter
  PEXP_059490 KGO45335 Sulfate anion transporter
  PEXP_043720 KGO39291 Alkali metal cation/H+ antiporter Nha1, C-terminal
  PEXP_052330 KGO42281 Major facilitator superfamily domain, general substrate transporter
  PEXP_037770 KGO36126 Major facilitator superfamily domain, general substrate transporter
  PEXP_102860 KGO36441 Mitochondrial carrier protein
  PEXP_023060 KGO42777 CDR ABC transporter
  PEXP_033600 KGO39977 Amino acid/polyamine transporter I
  PEXP_014370 KGO47550 Amino acid transporter, transmembrane
  PEXP_094860 KGO43584 Major facilitator superfamily domain, general substrate transporter
  PEXP_006100 KGO36811 Major facilitator superfamily domain, general substrate transporter
  PEXP_046430 KGO39169 Major facilitator superfamily domain, general substrate transporter
  PEXP_086200 KGO40808 Amino acid/polyamine transporter I
  PEXP_024440 KGO42573 Major facilitator superfamily domain, general substrate transporter
  PEXP_003610 KGO37353 Major facilitator superfamily domain, general substrate transporter
  PEXP_043410 KGO39260 Major facilitator superfamily domain, general substrate transporter
  PEXP_048620 KGO39686 Nickel/cobalt transporter, high-affinity
  PEXP_006360 KGO36837 Major facilitator superfamily domain, general substrate transporter
  PEXP_044620 KGO39381 Tetracycline resistance protein, TetA/multidrug resistance protein MdtG
  PEXP_072400 KGO48510 Major facilitator superfamily domain, general substrate transporter
  PEXP_028370 KGO43119 Amino acid transporter, transmembrane
  PEXP_009920 KGO48943 Peroxisomal biogenesis factor 11
  PEXP_033410 KGO39958 Major facilitator superfamily domain, general substrate transporter
  PEXP_050880 KGO42138 ABC transporter, integral membrane type 1
  PEXP_056980 KGO44205 Major facilitator superfamily domain, general substrate transporter
  PEXP_102420 KGO36222 Protein of unknown function DUF3468
  PEXP_074410 KGO48711 Major facilitator superfamily domain, general substrate transporter
  PEXP_068910 KGO46721 Major facilitator superfamily domain, general substrate transporter
  PEXP_060610 KGO45433 Major facilitator superfamily domain, general substrate transporter
  PEXP_009670 KGO49300 Cation/H+ exchanger
  PEXP_017290 KGO46087 Major facilitator superfamily domain, general substrate transporter
  PEXP_110420 KGO38764 ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter
  PEXP_059360 KGO45322 Mitochondrial carrier protein
  PEXP_095790 KGO43677 Major facilitator superfamily domain, general substrate transporter
  PEXP_040720 KGO48240 ABC transporter, integral membrane type 1
  PEXP_071990 KGO40700 ABC transporter, integral membrane type 1
  PEXP_048590 KGO39683 Amino acid/polyamine transporter I
  PEXP_104220 KGO36561 Cation/H+ exchanger
  PEXP_000120 KGO44321 Major facilitator superfamily domain, general substrate transporter
  PEXP_019490 KGO45826 C4-dicarboxylate transporter/malic acid transport protein
  PEXP_088420 KGO41618 ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter
  PEXP_076320 KGO37552 Major facilitator superfamily domain, general substrate transporter
  PEXP_001370 KGO37112 Major facilitator superfamily domain, general substrate transporter
  PEXP_001360 KGO37111 Major facilitator superfamily domain, general substrate transporter
  PEXP_104880 KGO41412 ABC transporter, integral membrane type 1
  PEXP_005240 KGO36725 Major facilitator superfamily domain, general substrate transporter
  PEXP_108540 KGO41848 Major facilitator superfamily domain, general substrate transporter
  PEXP_095400 KGO43638 Sodium/calcium exchanger membrane region
  PEXP_046610 KGO39187 Sodium/calcium exchanger membrane region
  PEXP_098820 KGO46270 Major facilitator superfamily domain, general substrate transporter
  PEXP_001950 KGO37170 Mitochondrial carrier protein
  PEXP_050270 KGO42077 ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter
  PEXP_023180 KGO42789 Major facilitator superfamily domain, general substrate transporter
  PEXP_010400 KGO48991 Major facilitator superfamily domain, general substrate transporter
  PEXP_098540 KGO46242 Major facilitator superfamily domain, general substrate transporter
  PEXP_066250 KGO46934 Major facilitator superfamily domain, general substrate transporter
  PEXP_062420 KGO45644 General substrate transporter
  PEXP_026170 KGO42868 Major facilitator superfamily domain, general substrate transporter
  PEXP_077310 KGO37715 CDR ABC transporter
  PEXP_022750 KGO42746 Major facilitator superfamily domain, general substrate transporter
  PEXP_068690 KGO46699 Major facilitator superfamily domain, general substrate transporter
  PEXP_066860 KGO46517 Major facilitator superfamily domain, general substrate transporter
  PEXP_086490 KGO40844 ABC transporter, integral membrane type 1
  PEXP_067360 KGO46567 Major facilitator superfamily domain, general substrate transporter
  PEXP_057530 KGO44260 ABC transporter, integral membrane type 1
  PEXP_034320 KGO40048 Arsenical pump membrane protein, ArsB
  PEXP_074940 KGO36159 Major facilitator superfamily domain, general substrate transporter