Graph mining for next generation sequencing: leveraging the assembly graph for biological insights

BMC Genomics

Table 2 Sequence features found on nodes with the highest Shannon’s index scores

Sample	Shannon's Index Score	Sequence Feature(s)	Blast E-Values
Female 33	3.69	Transporter, RelB/DinJ, Transposase	5e-15, 5e-32, 4e-32
Female 33	3.66	Transposase	1.00e-45
Female 58	2.58	Hypothetical protein	6.00e-04
Female 58	2.46	TonB-dependent receptor	6.00e-51
Female 92	2.82	Delta-lactam-biosynthetic de-N-acetylase	3.00e-57
Female 92	2.74	Resolvase	4.00e-87
Male 104	2.53	Transposase, Cbl	3e-32, 7e-27
Male 104	2.47	Phosphatase, Histidine phosphotransferase	2e-108, 4e-72
Male 68	2.86	PG1 protein	1.00e-32
Male 68	2.43	Transposase	1.00e-45
Female 638754422	3.75	Transposase, IS4 family	8.00e-61
Female 638754422	3.68	Transposase	2.00e-22
Female 763820215	3.26	Major facilitator transporter	0.00e + 00
Female 763820215	2.51	ATPase AAA	1.00e-120
Female 764042746	2.69	Transposase	1.00e-34
Female 764042746	2.64	DEAD/DEAH box helicase	1.00e-172
Female 809635352	4.65	30S ribosomal protein S12	1.00e-26
Female 809635352	4.58	Uracil phosphoribosyltransferase	7.00e-05
Female 764143897	3.90	None	NA
Female 764143897	3.63	None	NA
Male 604812005	2.96	Tetratricopeptide repeat protein	6.00e-47
Male 604812005	2.71	ATP-dependent DNA helicase RecQ	2.00e-149
Male 763435843	3.65	Putative transposase, Major Facilitator Superfamily protein, Glycosyltransferase, Group 1 family protein	5e-12, 1e-24, 8e-13
Male 763435843	3.47	Transposase	1.00e-43
Male 763961826	2.72	None	NA
Male 763961826	2.65	Transposase family protein, DNA polymerase IV	4e-67, 2e-51

ISSN: 1471-2164