Graph mining for next generation sequencing: leveraging the assembly graph for biological insights

BMC Genomics

Table 3 Comparative assembly results

Subject ID	Assembler	Number of Contigs ≥500 bps	N50 (bps)	NG50 Abundant Genera (bps)	(%) reads mapped to contigs	Chimeric contigs	Contigs with taxonomic assignment	Contigs with unknown assignemnt
33	Focus	89994	1310	2050	95.5 %	445	68037	21512
	IDBA-UD	33932	1267	1040	89.7 %	56	24534	9342
	MetaVelvet	18355	709	N/A	15.0 %	30	13250	5075
	Omega	1887	2037	N/A	12.5 %	74	156	1657
104	Focus	150930	1286	2371	95.7 %	720	102618	47592
	IDBA-UD	61848	1236	1759	87.3 %	70	42383	19395
	MetaVelvet	34011	702	513	17.2 %	41	22556	11414
	Omega	2579	2652	N/A	14.8 %	45	532	2002
764143897	Focus	159196	1599	2595	95.2 %	1383	94968	62845
	IDBA-UD	60679	1736	4009	92.1 %	265	34174	26240
	MetaVelvet	46123	723	626	30.4 %	140	24367	21616
	Omega	3433	2531	N/A	15.9 %	78	1637	816
809635352	Focus	251461	1296	2653	91.0 %	2819	127846	120796
	IDBA-UD	106962	1199	2976	85.2 %	571	51458	54933
	MetaVelvet	76809	719	774	30.7 %	269	33762	42778
	Omega	2546	2681	N/A	8.3 %	92	1815	639

ISSN: 1471-2164