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Table 1 Proportion of reads mapping to a specific classical allele relative to total reads mapping to all MHC class I classical alleles within each individual

From: A novel RNAseq–assisted method for MHC class I genotyping in a non-model species applied to a lethal vaccination-induced alloimmune disease

MHC class I gene

Allele

Individual

  

GH01

SEG09

SEG11

SEG18

SEG24

SEG29

SEG31

SEG16

SEG37

SEG12

SEG10

SEG312

1

1\*03101

  

0.295

  

0.303

      

1\*06701_FBN_1

          

0.188

 

2

2\*00601_FBN_2

         

0.110

  

2\*00601_FBN_3

          

0.177

 

2\*01601

 

0.172

0.209

 

0.180

0.205

  

0.173

   

2\*01601_FBN_4

         

0.168

  

2\*01602_FBN_5

          

0.151

 

2\*01802

0.251

           

2\*02603

           

0.251

2\*03201N

  

0.131

  

0.119

      

2\*04501_FBN_6

0.262

           

3

3\*00401_FBN_7

   

0.084

  

0.085

0.081

  

0.115

 

3\*00402

         

0.150

 

0.097

3\*01001_FBN_8

         

0.296

 

0.178

3\*01701

0.170

           

3\*02702

           

0.474

3\*03301N

0.012

           

3\*03301N_FBN_9

         

0.016

  

3\*05001

         

0.260

  

4

4\*06301_FBN_10

   

0.232

  

0.235

0.233

  

0.369

 

6

6\*01402

 

0.317

0.365

 

0.311

0.372

  

0.319

   

6\*01501

0.305

           

Un-assigned

class_FBN_11

 

0.317

 

0.422

0.317

 

0.415

0.421

0.322

   

class_FBN_12

 

0.194

 

0.262

0.192

 

0.264

0.265

0.186