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Table 2 Proportion of reads mapping to a specific non-classical allele relative to total reads mapping to all MHC class I non-classical alleles within individual

From: A novel RNAseq–assisted method for MHC class I genotyping in a non-model species applied to a lethal vaccination-induced alloimmune disease

MHC class I gene

Allele

Individual

  

GH

SEG09

SEG11

SEG18

SEG24

SEG29

SEG31

SEG16

SEG37

SEG12

SEG10

SEG312

NC 1

NC1\*00101_FBN_13

 

0.128

0.072

 

0.149

0.075

  

0.114

   

NC1\*00301_FBN_14

   

0.110

  

0.112

0.102

    

NC1\*00401_FBN_15

0.087

           

NC1\*00601

           

0.323

NC1\*00601_FBN_16

0.108

  

0.098

  

0.104

0.100

  

0.117

 

NC1\*00601_FBN_17

         

0.280

  

NC1\00701_FBN_18

         

0.075

 

0.122

NC 2

NC2\*00101

0.261

0.200

0.168

 

0.177

0.163

  

0.186

   

NC2\*00101_FBN_19

         

0.340

  

NC2\*00101_FBN_20

   

0.194

  

0.190

0.199

  

0.146

 

NC2\*00102

0.293

0.175

0.135

 

0.157

0.139

  

0.166

   

NC2\*00102_FBN_21

  

0.236

  

0.222

      

NC2\*00102_FBN_22

 

0.247

 

0.273

0.226

 

0.269

0.254

0.240

0.306

 

0.358

NC2\*00102_FBN_23

   

0.224

  

0.220

0.241

  

0.185

 

NC2\*00103_FBN_24

           

0.127

NC 3

NC3\*00101

 

0.222

0.370

 

0.262

0.384

  

0.248

   

NC3\*00101_FBN_25

          

0.281

 

NC3\*00101_FBN_26

0.199

           

NC 4

NC4\*00101

  

0.012

  

0.011

      

NC4\*00101_FBN_27

0.026

0.018

  

0.019

   

0.026

   

NC4\*00201

0.026

0.011

0.007

 

0.011

0.007

  

0.020

   

NC4\*00202_FBN_28

           

0.071

NC4\*00202_FBN_29

          

0.069

 

NC4\*00301_FBN_30

   

0.101

  

0.104

0.103

  

0.050

 

NC 5

NC5\*00101_FBN_31

          

0.152