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Table 2 Common CAG- and GeAG-enriched GO terms

From: Comparative transcriptome analysis revealing dormant conidia and germination associated genes in Aspergillus species: an essential role for AtfA in conidial dormancy

   

Count (changed: not changed)

 

GO

terms

A. fumigatus

A. niger

A. oryzae

Over (+)/under (−)

CAG-enriched

# C — Cellular component

 

GO:0009514

glyoxysome

13:24

10:28

15:21

+

GeAG-enriched

# C — Cellular component

 

GO:0005730

nucleolus

113:56

119:40

106:50

+

 

GO:0030686

90S preribosome

37:0

34:1

33:1

+

 

GO:0005829

cytosol

243:1105

333:986

225:1050

+

 

GO:0032040

small-subunit processome

32:2

35:0

33:2

+

 

GO:0005840

ribosome

44:22

57:16

44:21

+

 

GO:0005762

mitochondrial large ribosomal subunit

26:4

30:0

21:4

+

 

GO:0030687

preribosome, large subunit precursor

24:3

20:1

17:4

+

 

GO:0005739

mitochondrion

71:304

95:297

57:315

+

 

GO:0009986

cell surface

21:51

29:46

25:52

+

 

GO:0031966

mitochondrial membrane

12:13

14:13

11:11

+

 

GO:0005886

plasma membrane

42:224

73:191

43:214

+

 

GO:0005634

nucleus

154:1289

238:1331

140:1322

+

 

GO:0005819

spindle

8:13

10:12

7:13

+

 

GO:0016021

integral component of membrane

15:555

36:695

17:780

-

# F — Molecular function

 

GO:0003735

structural constituent of ribosome

110:18

126:3

95:9

+

 

GO:0003723

RNA binding

44:83

57:55

42:64

+

 

GO:0008026

ATP-dependent helicase activity

14:25

19:22

12:27

+

 

GO:0003743

translation initiation factor activity

12:16

23:6

15:12

+

 

GO:0051082

unfolded protein binding

14:30

21:25

13:28

+

 

GO:0005524

ATP binding

69:439

102:475

64:506

+

 

GO:0003676

nucleic acid binding

51:286

76:236

49:227

+

 

GO:0005525

GTP binding

18:75

24:68

21:81

+

 

GO:0000166

nucleotide binding

35:208

53:208

36:244

+

 

GO:0016491

oxidoreductase activity

8:391

20:634

12:635

-

 

GO:0000981

sequence-specific DNA binding RNA polymerase II transcription factor activity

2:238

12:326

2:248

-

# P — Biological process

 

GO:0006412

translation

86:14

97:3

72:11

+

 

GO:0006364

rRNA processing

26:7

24:4

23:9

+

 

GO:0000447

endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)

20:2

21:1

19:2

+

 

GO:0000027

ribosomal large subunit assembly

18:4

19:1

17:3

+

 

GO:0035690

cellular response to drug

34:151

49:135

37:157

+

 

GO:0006696

ergosterol biosynthetic process

10:16

11:15

8:19

+

 

GO:0006413

translational initiation

9:12

17:5

11:9

+

 

GO:0009060

aerobic respiration

9:18

12:11

9:16

+

 

GO:0008152

metabolic process

9:324

16:468

6:513

-

 

GO:0055085

transmembrane transport

16:405

21:552

16:651

-