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Table 3 A list of common CAGs (Ratio > 10)

From: Comparative transcriptome analysis revealing dormant conidia and germination associated genes in Aspergillus species: an essential role for AtfA in conidial dormancy

   

FPKM ratio of conidia to hyphae*1

   

A. fumigatus

A. niger

A. oryzae

A. fumigatus

A. niger

A. oryzae

atfA-dependency *2

Gene name in Af

Annotation in A. fumigatus

Afu2g00200

An12g10720

AO090113000153

-

458.5

-

full

cat3

Catalase, putative

Afu8g01530

An12g10710

AO090113000154

1751.2

1334.9

2307.7

n.d.

-

HHE domain protein

Afu1g01490

An15g07300

AO090102000259

1291.8

1040.6

467.4

n.d.

-

Hypothetical protein

Afu2g14330

An17g01885

AO090009000665

1014.6

238.2

780.3

n.d.

-

Hypothetical protein

Afu6g03210

An12g10240

AO090011000656

798.1

439.3

1367.5

full

conJ

Conidiation-specific protein 10

Afu8g05810

An15g04670

AO090005000570

584.1

1287.1

28.3

n.d.

-

DUF1295 domain protein

Afu5g10160

An14g04530

AO090010000533

560.4

133.2

22.4

n.d.

-

ActVA 4 protein

Afu8g00600

An03g00920

AO090010000696

525.8

-

-

n.d.

-

Conserved hypothetical protein

Afu3g01210

An01g10950

AO090026000081

454.0

867.9

583.9

n.d.

-

ThiJ/PfpI family protein

Afu5g01160

An03g02190

AO090020000259

338.5

21.7

12.7

full

-

Monosaccharide transporter

Afu8g06020

An15g04770

AO090005000539

275.9

74.8

297.8

full

-

Glutamate decarboxylase

Afu6g03890

An09g03130

AO090701000158

249.3

350.6

194.9

full

catA

Catalase A

Afu1g03580

An18g04120

AO090009000418

196.6

288.5

629.2

n.d.

-

Hypothetical protein

Afu3g00640

An11g08160

AO090009000116

165.1

189.5

25.2

n.d.

-

Peptidoglycan binding domain protein

Afu2g01590

An03g04860

AO090701000790

125.5

22.0

74.4

full

nce102

Non-classical export protein (Nce2), putative

Afu2g15740

An15g05990

AO090012000251

103.7

261.2

-

full

-

Oxidoreductase, short chaindehydrogenase/reductase family

Afu5g03930

An09g06270

AO090102000598

100.6

220.2

70.0

partial

-

Alcohol dehydrogenase, putative

Afu1g13530

An08g06600

AO090012000522

100.5

74.2

35.6

n.d.

-

Hypothetical protein

Afu3g03940

An01g00280

AO090124000046

91.1

24.5

47.6

full

-

2,3-diketo-5-methylthio-1-phosphopentanephosphatase, putative

Afu3g11550

An02g07350

AO090003000710

88.6

42.0

360.8

n.d.

-

LEA domain protein

Afu5g03269

An09g05520

AO090102000529

88.6

54.5

72.9

n.d.

-

Unknown

Afu6g08320

An11g01750

AO090003000094

87.1

81.9

134.4

n.d.

pilB

Putative conserved eisosome component

Afu3g12760

An02g08740

AO090012000846

81.3

85.1

268.0

n.d.

-

Hypothetical protein

Afu4g03390

An14g02450

AO090011000203

79.2

15.6

21.0

full

-

Aquaporin

Afu5g13100

An14g06050

AO090120000435

77.1

16.0

78.7

n.d.

-

Hypothetical protein

Afu6g13470

An08g03030

AO090020000658

60.5

-

496.2

n.d.

-

Conserved hypothetical protein

Afu1g13550

An08g06620

AO090012000521

45.4

97.8

113.2

n.d.

-

Hypothetical protein

Afu5g14310

An09g01150

AO090020000287

43.8

137.2

13.0

not CAG

-

Short chain dehydrogenase/reductase familyprotein

Afu3g10480

An16g04420

AO090003000594

31.5

76.5

134.2

n.d.

-

Conserved hypothetical protein

Afu6g08730

An11g06120

AO090001000547

30.2

49.1

699.1

not CAG

-

6-phosphogluconate dehydrogenase,decarboxylating

Afu4g09250

An04g04280

AO090023000611

29.7

11.6

18.2

n.d.

-

Hypothetical protein

Afu4g05900

An04g00100

AO090023001009

25.1

35.1

24.7

n.d.

-

Conserved hypothetical protein

Afu4g01020

An18g01860

AO090003001579

24.1

28.6

99.1

n.d.

fhk1

Sensor histidine kinase/response regulator, putative

Afu6g13860

An08g08500

AO090103000362

23.9

370.9

429.6

n.d.

-

Conserved hypothetical protein

Afu5g09180

An07g03930

AO090020000514

23.7

671.7

448.4

n.d.

-

Hypothetical protein

Afu4g10860

An04g05790

AO090003001124

23.2

22.7

24.9

n.d.

vosA

Velvet family protein

Afu5g01290

An14g07380

AO090010000635

22.4

680.6

42.7

partial

-

Oxidoreductase, zinc-binding dehydrogenasefamily, putative

Afu1g03090

An01g05320

AO090005000810

21.7

17.9

16.1

n.d.

-

Conserved hypothetical protein

Afu2g04200

An11g02200

AO090003000208

20.8

16.6

37.7

not CAG

hppD

4-hydroxyphenylpyruvate dioxygenase

Afu7g01430

An12g01460

AO090010000221

16.5

109.6

37.5

full

-

Opsin 1

Afu2g16930

An04g09030

AO090102000125

14.8

33.2

103.7

not CAG

-

Succinate:fumarate antiporter (Acr1), putative

Afu2g10020

An16g05030

AO090011000634

10.1

1755.9

87.7

n.d.

-

Hypothetical protein

Afu2g02310

An07g06530

AO090011000512

10.0

19.7

71.1

not CAG

sur7

sur7 protein, putative

  1. *1: “-”, not expressed in hyphae
  2. *2: AtfA-dependency is clarified by real-time RT PCR. n.d., not determined