Table 3 List of Up- and Down- regulated genes common in SsΔMAT-1b vs wild-type MAT-1 and SsΔMAT-1b X MAT-2 vs wild-type MAT-1 X MAT-2 comparing sets

sp|P38938|CEK1_SCHPO

13208

13.42056

1.68E-06

3.44586

0.01867

Serine/threonine-protein kinase cek1 OS = Schizosaccharomyces pombe (strain 972/ATCC 24843) GN = cek1 PE = 1 SV = 3

sp|P39960|BEM2_YEAST

8330

1.796835

0.023621

1.718937

0.023855

GTPase-activating protein BEM2/IPL2 OS = Saccharomyces cerevisiae (strain ATCC 204508/S288c) GN = BEM2 PE = 1 SV = 1

sp|Q6R3K9|YSL2_ARATH

2834

1.946333

0.003032

1.913564

0.010979

Metal-nicotianamine transporter YSL2 OS = Arabidopsis thaliana GN = YSL2 PE = 2 SV = 1

sp|Q9JME5|AP3B2_MOUSE

9407

12.37208

9.87E-06

4.222222

2.16E-05

AP-3 complex subunit beta-2 OS = Mus musculus GN = Ap3b2 PE = 1 SV = 2

sp|Q12019|MDN1_YEAST

16628

1.87115

0.005704

2.001882

0.002886

Midasin OS = Saccharomyces cerevisiae (strain ATCC 204508/S288c) GN = MDN1 PE = 1 SV = 1

sp|Q54YH4|DHKB_DICDI

6828

Inf

0.007605

10.75

0.005969

Hybrid signal transduction histidine kinase B OS = Dictyostelium discoideum GN = dhkB PE = 1 SV = 1

sp|A2BGA0|RFX4_DANRE

4929

6.911589

1.76E-06

1.937224

0.015736

Transcription factor RFX4 OS = Danio rerio GN = rfx4 PE = 2 SV = 1

sp|Q4P3W3|DBP10_USTMA

3384

12.41402

0.025351

4.851852

0.046387

ATP-dependent RNA helicase DBP10 OS = Ustilago maydis (strain 521/FGSC 9021) GN = DBP10 PE = 3 SV = 1

sp|P56584|SID1_USTMA

2399

1.764062

0.017173

2.524876

0.016416

L-ornithine 5-monooxygenase OS = Ustilago maydis (strain 521/FGSC 9021) GN = SID1 PE = 2 SV = 2

sp|P36619|PMD1_SCHPO

7057

2.328467

0.01718

2.990596

0.006957

Leptomycin B resistance protein pmd1 OS = Schizosaccharomyces pombe (strain 972/ATCC 24843) GN = pmd1 PE = 3 SV = 2

sp|Q4PC06|HOG1_USTMA

5538

3.954272

0.001332

2.294118

0.037876

Mitogen-activated protein kinase HOG1 OS = Ustilago maydis (strain 521/FGSC 9021) GN = HOG1 PE = 3 SV = 1

sp|P0CJ65|ATB54_ARATH

2265

0.02171

6.20E-19

0.178523

3.40E-06

Homeobox-leucine zipper protein ATHB-54 OS = Arabidopsis thaliana GN = ATHB-54 PE = 2 SV = 1

sp|P22943|HSP12_YEAST

1053

0.168388

9.19E-15

0.552964

0.01578

12 kDa heat shock protein OS = Saccharomyces cerevisiae (strain ATCC 204508/S288c) GN = HSP12 PE = 1 SV = 1

sp|O14094|PPX1_SCHPO

2702

0.36517

0.002301

0.144718

0.000202

Putative exopolyphosphatase OS = Schizosaccharomyces pombe (strain 972/ATCC 24843) GN = SPAC2F3.11 PE = 3 SV = 1

sp|Q6CHP9|CCM1_YARLI

2835

0.451759

0.010845

0.049724

1.68E-07

Mitochondrial group I intron splicing factor CCM1 OS = Yarrowia lipolytica (strain CLIB 122/E 150) GN = CCM1 PE = 3 SV = 1

sp|P22018|B4_USTMD

1539

0

9.33E-23

0.325834

0.001866

Mating-type locus allele B4 protein OS = Ustilago maydis PE = 3 SV = 1

sp|Q8VZ80|PLT5_ARATH

2427

0.452944

0.022087

0.493914

0.003544

Polyol transporter 5 OS = Arabidopsis thaliana GN = PLT5 PE = 1 SV = 2

sp|Q4WFX9|LAP2_ASPFU

2169

0.053682

0.00954

0.337114

4.19E-05

Probable leucine aminopeptidase 2 OS = Neosartorya fumigata (strain ATCC MYA-4609/Af293/CBS 101355/FGSC A1100) GN = lap2 PE = 3 SV = 2

sp|Q5UP73|YR614_MIMIV

1884

0.353454

2.79E-06

0.340428

1.15E-05

Putative band 7 family protein R614 OS = Acanthamoeba polyphaga mimivirus GN = MIMI_R614 PE = 3 SV = 1

sp|Q8K4J6|MKL1_MOUSE

736

0.600119

0.019664

0.330712

5.01E-06

MKL/myocardin-like protein 1 OS = Mus musculus GN = Mkl1 PE = 1 SV = 2

sp|Q9RPT1|RHLG_PSEAE

1073

0.337766

0.035915

0.16568

0.019132

Rhamnolipids biosynthesis 3-oxoacyl-[acyl-carrier-protein] reductase OS = Pseudomonas aeruginosa (strain ATCC 15692/PAO1/1C/PRS 101/LMG 12228) GN = rhlG PE = 1 SV = 1

sp|P80299|HYES_RAT

1160

0.467807

0.005301

0.425344

0.024971

Bifunctional epoxide hydrolase 2 OS = Rattus norvegicus GN = Ephx2 PE = 1 SV = 1

sp|P36914|AMYG_ASPOR

2852

0.569668

0.010942

0.419058

0.010065

Glucoamylase OS = Aspergillus oryzae (strain ATCC 42149/RIB 40) GN = glaA PE = 2 SV = 2

sp|P34211|YUAR_ECOLI

2743

0.226761

3.58E-06

0.318024

3.27E-05

Putative hydrolase YuaR OS = Escherichia coli (strain K12) GN = yuaR PE = 3 SV = 3

sp|O35750|SHOX2_RAT

3616

0.490521

0.005405

0.55

0.023074

Short stature homeobox protein 2 (Fragment) OS = Rattus norvegicus GN = Shox2 PE = 2 SV = 2

sp|Q767C8|IH5GT_IRIHO

2482

0.263235

3.53E-09

0.630828

0.048192

Cyanidin 3-O-rutinoside 5-O-glucosyltransferase OS = Iris hollandica GN = 5GT PE = 1 SV = 1

sp|O42922|YBIH_SCHPO

4584

0.240982

5.71E-10

0.61912

0.037253

Uncharacterized MFS-type transporter C16A3.17c OS = Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN = SPBC16A3.17c PE = 3 SV = 1