Table 2 Differential OTUs in diseased (GD) and control (C) Spanish farms; comparison with wild boars and UK farms

Bacteroidetes

26.1250

29.1804

29.346

23.8059

Bacteroidales

Bacteroidaceae

Bacteroides

1.6932

1.3426

8.4674

2.385

Porphyromonadaceae

2.8115

2.2021

0.6906

0.5237

Barnesiella

1.8488

1.4950

<0.1

<0.1

Prevotellaceae

4.3225

1.3013

1.7105

2.5665

Prevotella

3.3216

0.9066

1.685

2.5118

Weeksellaceae

14.9059

21.7160

17.7222

1.5944

Weeksella

14.5530

20.2616

6.4157

<0.1

Firmicutes

30.3821

19.0583

40.4671

20.4018

Bacilli

Lactobacillales

Lactobacillaceae

1.9351

1.2777

1.1864

0.4151

Lactobacillus

1.9305

1.1653

1.1826

0.4134

Streptococcaceae

2.9158

3.6426

3.9812

0.2754

Streptococcus

2.8840

3.6244

2.833

0.2714

Clostridia

Clostridiales

12.3320

7.6941

12.2484

18.8775

Lachnospiraceae

8.7595

5.4816

7.7619

4.2165

Clostridium XlVa

2.5326

1.6417

<0.1

<0.1

Peptostreptococcaceae

1.2544

0.7615

<0.1

<0.1

Clostridium XI

1.1982

0.7349

<0.1

<0.1

Ruminococcaceae

7.8575

3.5140

11.4209

5.3328

Oscillibacter

1.5302

0.9355

<0.1

<0.1

Proteobacteria

36.9336

44.1926

24.076

39.6401

Betaproteobacteria

Neisseriales

Neisseriaceae

1.1309

2.0309

1.0527

0.2597

Neisseria

0.7160

1.3641

<0.1

<0.1

Gammaproteobacteria

Enterobacteriales

Enterobacteriaceae

3.6917

3.0032

1.6001

0.8243

Klebsiella

2.1640

2.7505

<0.1

0.3157

Pasteurellales

Pasteurellaceae

6.4292

9.5108

2.3031

11.5475

Actinobacillus

1.4163

1.4664

<0.1

0.2603

Haemophilus

3.6043

7.6630

1.9811

11.1102

Pasteurella

1.3354

0.0468

<0.1

<0.1

Pseudomonadales

Moraxellaceae

23.5127

27.8645

18.7081

20.4429

Acinetobacter

0.1482

1.2382

1.8639

5.7347

Moraxella

23.2688

26.4523

16.2312

12.285

Tenericutes

2.3707

3.1578

0.4713

1.9082

Mollicutes

Mycoplasmatales

Mycoplasmataceae

2.2363

3.0477

0.1365

1.5609

Mycoplasma

2.2361

3.0476

0.1356

1.5609