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Table 1 Genes regulated by both VirR and RevR

From: RNA-seq analysis of virR and revR mutants of Clostridium perfringens

Functional Group Locus Gene Name Putative Product Log2 fold change: virR vs WTa Log2 fold change: revR vs WTa
Extracellular enzyme cpe0191 nagH hyaluronidase 2.07 −1.77
cpe0553 nanJ sialidase 2.15 −3.41
cpe1234 nagJ hyaluronidase 1.90 −2.10
cpe1523 nagL hyaluronidase 1.44 −2.07
Sporulation proteins cpe2048 sigF sporulation sigma factor 1.98 −1.98
cpe2146 ftsN Sporulation/cell division protein 1.56 −2.09
cpe1827 spoIIIAG sporulation protein AG 3.02 −4.03
cpe1761 sigG sporulation sigma factor 2.73 −2.06
cpe1753 spoIVA sporulation protein A 2.73 −2.44
Galactoside transporters cpe1341 mglB galactoside ABC transporter 2.42 −3.90
cpe1342 mglA galactoside ABC transporter 2.70 −3.71
cpe1343 mglC galactoside ABC transporter 2.69 −4.36
Fibronectin III domain proteins cpe1875 cpe1875 fibronectin/fucosidase 1.40 −1.84
cpe0818 cpe0818 endo-beta-N-acetylglucosaminidase 1.63 −2.26
Hypothetical proteins cpe1257 ugpB ABC transporter substrate binding protein 1.47 −3.51
cpe0554 cpe0554 camelysin-like protein 2.45 −3.25
cpe2262 cpe2262 has a camelysin M73 family peptidase domain 1.46 −2.20
cpe2261 cpe2261 hypothetical protein 1.53 −1.93
Othersb cpe2562 cspB protease 3.87 4.49
cpe0855 rubY rubrerythrin 1.42 1.66
cpe0584 fruA PTS fructose transporter −1.48 −1.83
cpe0638 pstC phosphate ABC transporter permease −1.27 −6.50
cpe0094 nirC nitrite transporter −1.75 −5.13
  1. aAs defined by FDR <0.01; log2 fold change > 1
  2. bGenes that are regulated by VirR and RevR in the same manner