RNA-seq analysis of virR and revR mutants of Clostridium perfringens

BMC Genomics

Table 1 Genes regulated by both VirR and RevR

Functional Group	Locus	Gene Name	Putative Product	Log₂ fold change: virR vs WT^a	Log₂ fold change: revR vs WT^a
Extracellular enzyme	cpe0191	nagH	hyaluronidase	2.07	−1.77
	cpe0553	nanJ	sialidase	2.15	−3.41
	cpe1234	nagJ	hyaluronidase	1.90	−2.10
	cpe1523	nagL	hyaluronidase	1.44	−2.07
Sporulation proteins	cpe2048	sigF	sporulation sigma factor	1.98	−1.98
	cpe2146	ftsN	Sporulation/cell division protein	1.56	−2.09
	cpe1827	spoIIIAG	sporulation protein AG	3.02	−4.03
	cpe1761	sigG	sporulation sigma factor	2.73	−2.06
	cpe1753	spoIVA	sporulation protein A	2.73	−2.44
Galactoside transporters	cpe1341	mglB	galactoside ABC transporter	2.42	−3.90
	cpe1342	mglA	galactoside ABC transporter	2.70	−3.71
	cpe1343	mglC	galactoside ABC transporter	2.69	−4.36
Fibronectin III domain proteins	cpe1875	cpe1875	fibronectin/fucosidase	1.40	−1.84
Fibronectin III domain proteins	cpe0818	cpe0818	endo-beta-N-acetylglucosaminidase	1.63	−2.26
Hypothetical proteins	cpe1257	ugpB	ABC transporter substrate binding protein	1.47	−3.51
	cpe0554	cpe0554	camelysin-like protein	2.45	−3.25
	cpe2262	cpe2262	has a camelysin M73 family peptidase domain	1.46	−2.20
	cpe2261	cpe2261	hypothetical protein	1.53	−1.93
Others^b	cpe2562	cspB	protease	3.87	4.49
	cpe0855	rubY	rubrerythrin	1.42	1.66
	cpe0584	fruA	PTS fructose transporter	−1.48	−1.83
	cpe0638	pstC	phosphate ABC transporter permease	−1.27	−6.50
	cpe0094	nirC	nitrite transporter	−1.75	−5.13

ISSN: 1471-2164