Table 1 Species present in the PhyloFish database
From: Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database
Name | Species | Phylogenetic group | Nb of contigs | WGD |
|---|---|---|---|---|
Bowfin | Amia calva | Amiiformes | 35064 | VGD2 |
Spotted gar | Lepisosteus oculatus | Lepisosteiformes | 41396 | VGD2 |
European eel | Anguilla anguilla | Anguilliformes | 60263 | TGD |
Butterfly fish | Pantodon buchlolzi | Osteoglossiformes | 44577 | TGD |
Arowana | Osteoglossum bicirrhosum | Osteoglossiformes | 55739 | TGD |
Elephantnose fish | Ghnathonemus petersi | Osteoglossiformes | 53423 | TGD |
Aliss shad | Alosa alosa | Clupeiformes | 53363 | TGD |
Zebrafish | Danio rerio | Cypriniformes | 48158 | TGD |
Panga | Pangasius hypophthalmus | Siluriformes | 43013 | TGD |
Black ghost knifefish | Apteronotus albifrons | Gymnotiformes | 45356 | TGD |
Mexican tetra (cave) | Astyanax mexicanus | Chraraciformes | 47729 | TGD |
Mexican tetra (surface) | Astyanax mexicanus | Characiformes | 46670 | TGD |
Northern pike | Esox lucius | Esociformes | 48567 | TGD |
Eastern mudminnow | Umbra pygmae | Esociformes | 46381 | TGD |
Grayling | Thymallus thymallus | Salmoniformes | 67157 | SaGD |
European whitefish | Coregonus lavaretus | Salmoniformes | 74701 | SaGD |
American whitefish | Coregonus clupeaformis | Salmoniformes | 66996 | SaGD |
Brown trout | Salmo trutta | Salmoniformes | 75338 | SaGD |
Rainbow trout | Oncorhynchus mykiss | Salmoniformes | 78415 | SaGD |
Brook trout | Salvelinus fontinalis | Salmoniformes | 69441 | SaGD |
Sweetfish | Pecoglossus altivelis | Osmeriformes | 47484 | TGD |
Atlantic cod | Gadus morhua | Gadiformes | 50564 | TGD |
Medaka | Orysias latipes | Beloniformes | 42186 | TGD |
European perch | Perca fluviatilis | Perciformes | 49204 | TGD |