Skip to main content

Table 3 Summary of SNP and CCNV analyses

From: Host-induced aneuploidy and phenotypic diversification in the Sudden Oak Death pathogen Phytophthora ramorum

Isolate group

CCNV categorya

Isolate

Colony phenotype

Reference isolate

# CCNV regions (mean size bp)

NA1

Normal Euploid

MK649b (wt, bay)

wt

used as ref.

n/a

Normal Euploid

Pr-1556 (wt, bay)

wt

used as ref.

n/a

Normal Euploid

Pr-710 (wt, bay)

wt

used as ref.

n/a

Normal Euploid

Pr-745 (wt, bay)

wt

used as ref.

n/a

Normal Euploid

Pr-745#1 (wt, bay- > oak)

wt

Pr-710

0 (0)

Normal Euploid

MK548 (wt, bay)

wt

MK649b

4 (2,625)

Normal Euploid

MK79j (wt, bay)

wt

Pr-710

4 (4,350)

Normal Euploid

Pr-1556#2 (wt, bay- > race tube)

wt

Pr-710

6 (2,932)

Normal Euploid

MK106 (wt, oak)

wt

MK649b

8 (2,211)

Normal Euploid

Pr-710#1 (wt, bay- > oak)

wt

Pr-710

9 (3,580)

Normal Euploid

MK649a (wt, bay)

wt

Pr-710

10 (3,732)

Normal Euploid

ND886_UC#1 (wt, camellia- > bay)

wt

Pr-1556

10 (2,360)

Normal Euploid

MK516d (wt, oak)

wt

Pr-710

11 (2,285)

Normal Euploid

ND886_QA#7 (wt, camellia- > oak)

wt

MK649b

11 (3,045)

Normal Euploid

Pr-1556#7 (wt, bay- > oak)

wt

MK649b

12 (1,350)

Normal Euploid

MK558 (wt, oak)

wt

MK649b

26 (1,050)

Normal Euploid

ND886_QA#9 (wt, camellia- > oak)

wt

Pr-1556

20 (5,450)

2x cnLOH

MK516a (nwt, oak)

nwt

Pr-1556

287 (3,876)

1x CCNV

Pr-140.9 (wt, oak)

wt

Pr-1556

218 (8,598)

CCNV heterokaryon

Pr-745#4 (nwt, bay- > oak)

nwt

Pr-1556

171 (15,536)

CCNV heterokaryon

Pr-140.7 (nwt, oak)

nwt

Pr-1556

256 (11,375)

CCNV heterokaryon

Pr-1556#7#1 (nwt, bay- > oak- > race tube)

nwt

Pr-1556

271 (41,465)

3x CCNV

Pr-102_UC#4 (wt, oak- > bay)

wt

Pr-1556

114 (27,238)

3x CCNV

Pr-102 (nwt, oak)

nwt

Pr-745

215 (14,358)

3x CCNV

Pr-745#3 (nwt, bay- > oak)

nwt

Pr-745

339 (17,271)

3x CCNV + 2x cnLOH

Pr-16 (nwt, oak)

nwt

Pr-745

903 (5,924)

CCNV generationb

Normal Euploid

Pr-1556 (wt, bay)

wt

used as ref.

n/a

Normal Euploid

Pr-1556#2 (wt, bay- > race tube)

wt

Pr-710

6 (2,932)

Normal Euploid

Pr-1556#7 (wt, bay- > oak)

wt

MK649b

12 (1,350)

CCNV heterokaryon

Pr-1556#7#1 (nwt, bay- > oak- > race tube)

nwt

Pr-1556

271 (41,465)

EU1c

CCNV heterokaryon

P2363 (wt, C. lawsoniana), middle of the lesion

wt

Pr-1556

2,060 (5,105)

CCNV heterokaryon

P2346 (nwt, C. lawsoniana), bottom of the lesion

nwt

P2363

473 (21,500)

CCNV heterokaryon

P2386 (nwt, C. lawsoniana), top of the lesion

nwt

P2363

275 (6,546)

  1. aAccording to CCNV and allele ratio analyses, isolates were categorized into five groups. Details are in the main text
  2. bNA1 clonal isolates subjected to a series of passage experiments were consolidated to highlight the generation of CCNVs. These isolates are also listed under NA1 isolates
  3. cThe three EU1 isolates were obtained from the middle, bottom and top of a ca. 4 m long lesion on Chamaecyparis lawsoniana