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Table 3 Summary of SNP and CCNV analyses

From: Host-induced aneuploidy and phenotypic diversification in the Sudden Oak Death pathogen Phytophthora ramorum

Isolate group CCNV categorya Isolate Colony phenotype Reference isolate # CCNV regions (mean size bp)
NA1 Normal Euploid MK649b (wt, bay) wt used as ref. n/a
Normal Euploid Pr-1556 (wt, bay) wt used as ref. n/a
Normal Euploid Pr-710 (wt, bay) wt used as ref. n/a
Normal Euploid Pr-745 (wt, bay) wt used as ref. n/a
Normal Euploid Pr-745#1 (wt, bay- > oak) wt Pr-710 0 (0)
Normal Euploid MK548 (wt, bay) wt MK649b 4 (2,625)
Normal Euploid MK79j (wt, bay) wt Pr-710 4 (4,350)
Normal Euploid Pr-1556#2 (wt, bay- > race tube) wt Pr-710 6 (2,932)
Normal Euploid MK106 (wt, oak) wt MK649b 8 (2,211)
Normal Euploid Pr-710#1 (wt, bay- > oak) wt Pr-710 9 (3,580)
Normal Euploid MK649a (wt, bay) wt Pr-710 10 (3,732)
Normal Euploid ND886_UC#1 (wt, camellia- > bay) wt Pr-1556 10 (2,360)
Normal Euploid MK516d (wt, oak) wt Pr-710 11 (2,285)
Normal Euploid ND886_QA#7 (wt, camellia- > oak) wt MK649b 11 (3,045)
Normal Euploid Pr-1556#7 (wt, bay- > oak) wt MK649b 12 (1,350)
Normal Euploid MK558 (wt, oak) wt MK649b 26 (1,050)
Normal Euploid ND886_QA#9 (wt, camellia- > oak) wt Pr-1556 20 (5,450)
2x cnLOH MK516a (nwt, oak) nwt Pr-1556 287 (3,876)
1x CCNV Pr-140.9 (wt, oak) wt Pr-1556 218 (8,598)
CCNV heterokaryon Pr-745#4 (nwt, bay- > oak) nwt Pr-1556 171 (15,536)
CCNV heterokaryon Pr-140.7 (nwt, oak) nwt Pr-1556 256 (11,375)
CCNV heterokaryon Pr-1556#7#1 (nwt, bay- > oak- > race tube) nwt Pr-1556 271 (41,465)
3x CCNV Pr-102_UC#4 (wt, oak- > bay) wt Pr-1556 114 (27,238)
3x CCNV Pr-102 (nwt, oak) nwt Pr-745 215 (14,358)
3x CCNV Pr-745#3 (nwt, bay- > oak) nwt Pr-745 339 (17,271)
3x CCNV + 2x cnLOH Pr-16 (nwt, oak) nwt Pr-745 903 (5,924)
CCNV generationb Normal Euploid Pr-1556 (wt, bay) wt used as ref. n/a
Normal Euploid Pr-1556#2 (wt, bay- > race tube) wt Pr-710 6 (2,932)
Normal Euploid Pr-1556#7 (wt, bay- > oak) wt MK649b 12 (1,350)
CCNV heterokaryon Pr-1556#7#1 (nwt, bay- > oak- > race tube) nwt Pr-1556 271 (41,465)
EU1c CCNV heterokaryon P2363 (wt, C. lawsoniana), middle of the lesion wt Pr-1556 2,060 (5,105)
CCNV heterokaryon P2346 (nwt, C. lawsoniana), bottom of the lesion nwt P2363 473 (21,500)
CCNV heterokaryon P2386 (nwt, C. lawsoniana), top of the lesion nwt P2363 275 (6,546)
  1. aAccording to CCNV and allele ratio analyses, isolates were categorized into five groups. Details are in the main text
  2. bNA1 clonal isolates subjected to a series of passage experiments were consolidated to highlight the generation of CCNVs. These isolates are also listed under NA1 isolates
  3. cThe three EU1 isolates were obtained from the middle, bottom and top of a ca. 4 m long lesion on Chamaecyparis lawsoniana