Fig. 1
From: Establishing and validating regulatory regions for variant annotation and expression analysis
Screenshot of a part of promoter report showing best supported (a) and secondary (b) promoters of FGFR1 generated via TRANSFAC Professional online interface. Overlapped features include ChIP-on-chip/-seq fragments (identifies DNA fragments shown in vivo to be bound by a transcription factor, based on ChIP-seq or related experiments), Histone modifications (identifies DNA fragments shown in vivo to be bound by histones with a particular modification, based on ChIP-seq or related experiments), DNase hypersensitivity sites derived from ENCODE, TSSs (identifies transcription start sites from Ensembl), TRANSFAC experimental and predicted sites and more. Most of these features can be filtered by cell type used in the experiment, transcription factor, position etc