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Table 2 Change in positions of vTSSs between genome builds hg19 and hg38

From: Establishing and validating regulatory regions for variant annotation and expression analysis

 

All promoters

% All promoters

Best supported promoters

% Best supported promoters

Unchanged

58,077

82 %

35,343

77 %

Shifted 1–10 nt

3,179

4 %

2,693

6 %

Shifted 11–100 nt

4,184

6 %

3,465

7 %

Shifted 101–1,000 nt

1,455

2 %

952

2 %

Total

71,118

 

45,608

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