TY - CHAP AU - Imhoff, J. F. ED - Brenner, D. J. ED - Krieg, N. R. ED - Staley, J. T. ED - Garrity, G. M. ED - Boone, D. R. ED - Vos, P. ED - Goodfellow, M. ED - Rainey, F. A. ED - Schleifer, K. -. H. PY - 2005 DA - 2005// TI - Enterobacteriales” BT - Bergey’s Manual® of Systematic Bacteriology: Vol 2 The Proteobacteria Part B The Gammaproteobacteria PB - Springer US CY - Boston, MA UR - https://doi.org/10.1007/0-387-28022-7_13 DO - 10.1007/0-387-28022-7_13 ID - Imhoff2005 ER - TY - JOUR AU - Reddy, T. B. AU - Thomas, A. D. AU - Stamatis, D. AU - Bertsch, J. AU - Isbandi, M. AU - Jansson, J. PY - 2015 DA - 2015// TI - The Genomes OnLine Database (GOLD) v. 5: a metadata management system based on a four level (meta)genome project classification JO - Nucleic Acids Res VL - 43 UR - https://doi.org/10.1093/nar/gku950 DO - 10.1093/nar/gku950 ID - Reddy2015 ER - TY - JOUR AU - Blount, Z. D. PY - 2015 DA - 2015// TI - The unexhausted potential of E JO - Coli eLife VL - 4 ID - Blount2015 ER - TY - JOUR AU - Ohl, M. E. AU - Miller, S. I. PY - 2001 DA - 2001// TI - Salmonella: a model for bacterial pathogenesis JO - Annu Rev Med VL - 52 UR - https://doi.org/10.1146/annurev.med.52.1.259 DO - 10.1146/annurev.med.52.1.259 ID - Ohl2001 ER - TY - JOUR AU - Josenhans, C. AU - Suerbaum, S. PY - 2002 DA - 2002// TI - The role of motility as a virulence factor in bacteria JO - Int J Med Microbiol VL - 291 UR - https://doi.org/10.1078/1438-4221-00173 DO - 10.1078/1438-4221-00173 ID - Josenhans2002 ER - TY - JOUR AU - Macnab, R. M. PY - 2003 DA - 2003// TI - How bacteria assemble flagella JO - Annu Rev Microbiol VL - 57 UR - https://doi.org/10.1146/annurev.micro.57.030502.090832 DO - 10.1146/annurev.micro.57.030502.090832 ID - Macnab2003 ER - TY - JOUR AU - Soutourina, O. A. AU - Bertin, P. N. PY - 2003 DA - 2003// TI - Regulation cascade of flagellar expression in Gram-negative bacteria JO - FEMS Microbiol Rev VL - 27 UR - https://doi.org/10.1016/S0168-6445(03)00064-0 DO - 10.1016/S0168-6445(03)00064-0 ID - Soutourina2003 ER - TY - JOUR AU - Fenchel, T. PY - 2002 DA - 2002// TI - Microbial behavior in a heterogeneous world JO - Science VL - 296 UR - https://doi.org/10.1126/science.1070118 DO - 10.1126/science.1070118 ID - Fenchel2002 ER - TY - JOUR AU - Hayashi, F. AU - Smith, K. D. AU - Ozinsky, A. AU - Hawn, T. R. AU - Yi, E. C. AU - Goodlett, D. R. PY - 2001 DA - 2001// TI - The innate immune response to bacterial flagellin is mediated by Toll-like receptor 5 JO - Nature VL - 410 UR - https://doi.org/10.1038/35074106 DO - 10.1038/35074106 ID - Hayashi2001 ER - TY - JOUR AU - Tarahomjoo, S. PY - 2014 DA - 2014// TI - Utilizing bacterial flagellins against infectious diseases and cancers JO - Antonie Van Leeuwenhoek VL - 105 UR - https://doi.org/10.1007/s10482-013-0075-2 DO - 10.1007/s10482-013-0075-2 ID - Tarahomjoo2014 ER - TY - JOUR AU - Aldridge, P. D. AU - Wu, C. AU - Gnerer, J. AU - Karlinsey, J. E. AU - Hughes, K. T. AU - Sachs, M. S. PY - 2006 DA - 2006// TI - Regulatory protein that inhibits both synthesis and use of the target protein controls flagellar phase variation in Salmonella enterica JO - Proc Natl Acad Sci U S A VL - 103 UR - https://doi.org/10.1073/pnas.0602127103 DO - 10.1073/pnas.0602127103 ID - Aldridge2006 ER - TY - JOUR AU - Liu, B. AU - Hu, B. AU - Zhou, Z. AU - Guo, D. AU - Guo, X. AU - Ding, P. PY - 2012 DA - 2012// TI - A novel non-homologous recombination-mediated mechanism for Escherichia coli unilateral flagellar phase variation JO - Nucleic Acids Res VL - 40 UR - https://doi.org/10.1093/nar/gks040 DO - 10.1093/nar/gks040 ID - Liu2012 ER - TY - JOUR AU - Logan, S. M. PY - 2006 DA - 2006// TI - Flagellar glycosylation - a new component in the motility repetoire? JO - Microbiol VL - 152 UR - https://doi.org/10.1099/mic.0.28735-0 DO - 10.1099/mic.0.28735-0 ID - Logan2006 ER - TY - JOUR AU - Miller, W. AU - Matewish, M. J. AU - McNally, D. J. AU - Ishiyama, N. AU - Anderson, E. M. AU - Brewer, D. PY - 2008 DA - 2008// TI - Flagellin glycosylation in Pseudomonas aeruginosa PAK requires the O-antigen biosynthesis enzyme WbpO JO - J Biol Chem VL - 283 UR - https://doi.org/10.1074/jbc.M708894200 DO - 10.1074/jbc.M708894200 ID - Miller2008 ER - TY - JOUR AU - Szymanski, C. M. AU - Logan, S. M. AU - Linton, D. AU - Wren, B. W. PY - 2003 DA - 2003// TI - Campylobacter - a tale of two protein glycosylation systems JO - Trends Microbiol VL - 11 UR - https://doi.org/10.1016/S0966-842X(03)00079-9 DO - 10.1016/S0966-842X(03)00079-9 ID - Szymanski2003 ER - TY - JOUR AU - Taguchi, F. AU - Suzuki, T. AU - Takeuchi, K. AU - Inagaki, Y. AU - Toyoda, K. AU - Shiraishi, T. PY - 2009 DA - 2009// TI - Glycosylation of flagellin from Pseudmonas syringae pv. tabaci 6605 contributes to evasion of host tobacco plant surveillance systems.Physiol Mol JO - Plant Pathol VL - 74 ID - Taguchi2009 ER - TY - JOUR AU - Power, P. M. AU - Jennings, M. P. PY - 2003 DA - 2003// TI - The genetics of glycosylation in Gram-negative bacteria JO - FEMS Microbiol Lett VL - 218 UR - https://doi.org/10.1111/j.1574-6968.2003.tb11520.x DO - 10.1111/j.1574-6968.2003.tb11520.x ID - Power2003 ER - TY - JOUR AU - Merino, S. AU - Tomás, J. M. PY - 2014 DA - 2014// TI - Gram-negative flagella glycosylation JO - Int J Mol Sci VL - 15 UR - https://doi.org/10.3390/ijms15022840 DO - 10.3390/ijms15022840 ID - Merino2014 ER - TY - JOUR AU - Frye, J. AU - Karlinsey, J. E. AU - Felise, H. R. AU - Marzolf, B. AU - Dowidar, N. AU - McClelland, M. PY - 2006 DA - 2006// TI - Identification of new flagellar genes of Salmonella enterica serovar Typhimurium JO - J Bacteriol VL - 188 UR - https://doi.org/10.1128/JB.188.6.2233-2243.2006 DO - 10.1128/JB.188.6.2233-2243.2006 ID - Frye2006 ER - TY - JOUR AU - Deditius, J. A. AU - Felgner, S. AU - Spöring, I. AU - Kühne, C. AU - Frahm, M. AU - Rohde, M. PY - 2015 DA - 2015// TI - Characterization of novel factors involved in swimming and swarming motility in Salmonella enterica serovar Typhimurium JO - PLoS One VL - 10 UR - https://doi.org/10.1371/journal.pone.0135351 DO - 10.1371/journal.pone.0135351 ID - Deditius2015 ER - TY - JOUR AU - Burnens, A. P. AU - Stanley, J. AU - Sack, R. AU - Hunziker, P. AU - Brodard, I. AU - Nicolet, J. PY - 1997 DA - 1997// TI - The flagellin N-methylase gene fliB and an adjacent serovar-specific IS200 element in Salmonella typhimurium JO - Microbiol VL - 143 UR - https://doi.org/10.1099/00221287-143-5-1539 DO - 10.1099/00221287-143-5-1539 ID - Burnens1997 ER - TY - JOUR AU - Stocker, B. AU - McDonough, M. AU - Ambler, R. PY - 1961 DA - 1961// TI - A gene determining presence or absence of ε-N-methyl-lysine in Salmonella flagellar protein JO - Nat VL - 189 UR - https://doi.org/10.1038/189556a0 DO - 10.1038/189556a0 ID - Stocker1961 ER - TY - JOUR AU - Yahara, K. AU - Fukuyo, M. AU - Sasaki, A. AU - Kobayashi, I. PY - 2009 DA - 2009// TI - Evolutionary maintenance of selfish homing endonuclease genes in the absence of horizontal gene transfer JO - Proc Natl Acad Sci U S A VL - 106 UR - https://doi.org/10.1073/pnas.0908404106 DO - 10.1073/pnas.0908404106 ID - Yahara2009 ER - TY - JOUR AU - Echeita, M. A. AU - Herrera, S. AU - Usera, M. A. PY - 2001 DA - 2001// TI - Atypical, fljB-negative Salmonella enterica subsp. enterica strain of servar 4,5,12:i:- appears to be a monophasic variant of serovar Typhimurium JO - J Clin Microbiol VL - 39 UR - https://doi.org/10.1128/JCM.39.8.2981-2983.2001 DO - 10.1128/JCM.39.8.2981-2983.2001 ID - Echeita2001 ER - TY - JOUR AU - Coutinho, P. M. AU - Deleury, E. AU - Davies, G. J. AU - Henrissat, B. PY - 2003 DA - 2003// TI - An evolving hierarchical family classification for glycosyltransferases JO - J Mol Biol VL - 328 UR - https://doi.org/10.1016/S0022-2836(03)00307-3 DO - 10.1016/S0022-2836(03)00307-3 ID - Coutinho2003 ER - TY - JOUR AU - Altschul, S. F. AU - Gish, W. AU - Miller, W. AU - Myers, E. W. AU - Lipman, D. J. PY - 1990 DA - 1990// TI - Basic local alignment search tool JO - J Mol Biol VL - 215 UR - https://doi.org/10.1016/S0022-2836(05)80360-2 DO - 10.1016/S0022-2836(05)80360-2 ID - Altschul1990 ER - TY - JOUR AU - Lombard, V. AU - Golaconda Ramulu, H. AU - Drula, E. AU - Coutinho, P. M. AU - Henrissat, B. PY - 2014 DA - 2014// TI - The carbohydrate-active enzymes database (CAZy) in 2013 JO - Nucleic Acids Res VL - 42 UR - https://doi.org/10.1093/nar/gkt1178 DO - 10.1093/nar/gkt1178 ID - Lombard2014 ER - TY - JOUR AU - Yin, Y. AU - Mao, X. AU - Yang, J. C. AU - Chen, X. AU - Mao, F. AU - Xu, Y. PY - 2012 DA - 2012// TI - dbCAN: a web resource for automated carbohydrate-active enzyme annotation JO - Nucleic Acids Res VL - 40 UR - https://doi.org/10.1093/nar/gks479 DO - 10.1093/nar/gks479 ID - Yin2012 ER - TY - JOUR AU - Edwards, K. J. AU - Allen, S. AU - Gibson, B. W. AU - Campagnari, A. A. PY - 2005 DA - 2005// TI - Characterization of a cluster of three glycosyltransferase enzymes essential for Moraxella catarrhalis lipooligosaccharide assembly JO - J Bacteriol VL - 187 UR - https://doi.org/10.1128/JB.187.9.2939-2947.2005 DO - 10.1128/JB.187.9.2939-2947.2005 ID - Edwards2005 ER - TY - JOUR AU - Lin, Q. AU - Reeves, P. R. PY - 2000 DA - 2000// TI - Genetic variation of dTDP-L-rhamnose pathway genes in Salmonella enterica JO - Microbiol VL - 146 UR - https://doi.org/10.1099/00221287-146-9-2291 DO - 10.1099/00221287-146-9-2291 ID - Lin2000 ER - TY - JOUR AU - Pan, Y. -. J. AU - Lin, T. -. L. AU - Chen, C. -. T. AU - Chen, Y. -. Y. AU - Hsieh, P. -. F. AU - Hsu, C. -. R. PY - 2015 DA - 2015// TI - Genetic analysis of capsular polysaccharide synthesis gene clusters in 79 capsular types of Klebsiella spp JO - Sci Rep VL - 5 UR - https://doi.org/10.1038/srep15573 DO - 10.1038/srep15573 ID - Pan2015 ER - TY - JOUR AU - Li, X. AU - Perepelov, A. V. AU - Wang, Q. AU - Senchenkova, S. N. AU - Liu, B. AU - Shevelev, S. D. PY - 2010 DA - 2010// TI - Structural and genetic characterization of the O-antigen of Escherichia coli O161 containing a derivative of a higher acidic diamino sugar, legionaminic acid JO - Carbohydr Res VL - 345 UR - https://doi.org/10.1016/j.carres.2010.04.008 DO - 10.1016/j.carres.2010.04.008 ID - Li2010 ER - TY - JOUR AU - Jones, G. M. AU - Wu, J. AU - Ding, Y. AU - Uchida, K. AU - Aizawa, S. AU - Robotham, A. PY - 2012 DA - 2012// TI - Identification of genes involved in the acetamidino group modification of the flagellin N-linked glycan of Methanococcus maripaludis JO - J Bacteriol VL - 194 UR - https://doi.org/10.1128/JB.06686-11 DO - 10.1128/JB.06686-11 ID - Jones2012 ER - TY - JOUR AU - Li, H. AU - Yu, C. AU - Chen, H. AU - Tian, F. AU - He, C. PY - 2015 DA - 2015// TI - PXO_00987, a putative acetyltransferase, is required for flagellin glycosylation, and regulates flagellar motility, exopolysaccharide production, and biofilm formation in Xanthomonas oryzae pv. oryzae JO - Microb Pathog VL - 85 UR - https://doi.org/10.1016/j.micpath.2015.06.001 DO - 10.1016/j.micpath.2015.06.001 ID - Li2015 ER - TY - JOUR AU - Chan, D. I. AU - Vogel, H. J. PY - 2010 DA - 2010// TI - Current understanding of fatty acid biosynthesis and the acyl carrier protein JO - Biochem J VL - 430 UR - https://doi.org/10.1042/BJ20100462 DO - 10.1042/BJ20100462 ID - Chan2010 ER - TY - JOUR AU - Nothaft, H. AU - Szymanski, C. M. PY - 2010 DA - 2010// TI - Protein glycosylation in bacteria: sweeter than ever JO - Nat Rev Microbiol VL - 8 UR - https://doi.org/10.1038/nrmicro2383 DO - 10.1038/nrmicro2383 ID - Nothaft2010 ER - TY - JOUR AU - Schmidt, M. A. AU - Riley, L. W. AU - Benz, I. PY - 2003 DA - 2003// TI - Sweet new world: glycoproteins in bacterial pathogens JO - Trends Microbiol VL - 11 UR - https://doi.org/10.1016/j.tim.2003.10.004 DO - 10.1016/j.tim.2003.10.004 ID - Schmidt2003 ER - TY - JOUR AU - Zhou, M. AU - Yang, Y. AU - Chen, P. AU - Hu, H. AU - Hardwidge, P. R. PY - 2015 DA - 2015// TI - More than a locomotive organelle: flagella in Escherichia coli JO - Appl Microbiol Biotechnol VL - 99 UR - https://doi.org/10.1007/s00253-015-6946-x DO - 10.1007/s00253-015-6946-x ID - Zhou2015 ER - TY - JOUR AU - Hanuszkiewicz, A. AU - Pittock, P. AU - Humphries, F. AU - Moll, H. AU - Rosales, A. R. AU - Molinaro, A. PY - 2014 DA - 2014// TI - Identification of the flagellin glycosylation system in Burkholderia cenocepacia and the contribution of glycosylated flagellin to evasion of human innate immune responses JO - J Biol Chem VL - 289 UR - https://doi.org/10.1074/jbc.M114.562603 DO - 10.1074/jbc.M114.562603 ID - Hanuszkiewicz2014 ER - TY - JOUR AU - Takeuchi, K. AU - Taguchi, F. AU - Inagaki, Y. AU - Toyoda, K. AU - Shiraishi, T. AU - Ichinose, Y. PY - 2003 DA - 2003// TI - Flagellin glycosylation island in Pseudomonas syringae pv. glycinea and its role in host specificity JO - J Bacteriol VL - 185 UR - https://doi.org/10.1128/JB.185.22.6658-6665.2003 DO - 10.1128/JB.185.22.6658-6665.2003 ID - Takeuchi2003 ER - TY - JOUR AU - Partridge, J. D. AU - Harshey, R. M. PY - 2013 DA - 2013// TI - Sawrming: flexible roaming plans JO - J Bacteriol VL - 195 UR - https://doi.org/10.1128/JB.02063-12 DO - 10.1128/JB.02063-12 ID - Partridge2013 ER - TY - JOUR AU - Inoue, T. AU - Shingaki, R. AU - Hirose, S. AU - Waki, K. AU - Mori, H. AU - Fukui, K. PY - 2007 DA - 2007// TI - Genome-wide screening of genes required for swarming motility in Escherichia coli K-12 JO - J Bacteriol VL - 189 UR - https://doi.org/10.1128/JB.01294-06 DO - 10.1128/JB.01294-06 ID - Inoue2007 ER - TY - JOUR AU - Hall, T. A. PY - 1999 DA - 1999// TI - BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT JO - Nucleic Acids Symp Ser VL - 41 ID - Hall1999 ER - TY - JOUR AU - Besemer, J. AU - Lomsadze, A. AU - Borodovsky, M. PY - 2001 DA - 2001// TI - GeneMarkS: a self-training method for prediction of gene starts in microbial genomes. Implications for funding sequence motifs in regulatory regions JO - Nucleic Acids Res VL - 29 UR - https://doi.org/10.1093/nar/29.12.2607 DO - 10.1093/nar/29.12.2607 ID - Besemer2001 ER - TY - JOUR AU - Marchler-Bauer, A. AU - Bryant, S. H. PY - 2004 DA - 2004// TI - CD-Search: protein domain annotations on the fly JO - Nucleic Acids Res VL - 32 UR - https://doi.org/10.1093/nar/gkh454 DO - 10.1093/nar/gkh454 ID - Marchler-Bauer2004 ER - TY - JOUR AU - Marchler-Bauer, A. AU - Derbyshire, M. K. AU - Gonzales, N. R. AU - Lu, S. AU - Chitsaz, F. AU - Geer, L. Y. PY - 2015 DA - 2015// TI - CDD: NCBI’s conserved domain database JO - Nucleic Acids Res VL - 43 UR - https://doi.org/10.1093/nar/gku1221 DO - 10.1093/nar/gku1221 ID - Marchler-Bauer2015 ER - TY - JOUR AU - Katoh, K. AU - Standley, D. M. PY - 2013 DA - 2013// TI - MAFFT multiple sequence alignment version 7: improvements in performance and usability JO - Mol Biol Evol VL - 30 UR - https://doi.org/10.1093/molbev/mst010 DO - 10.1093/molbev/mst010 ID - Katoh2013 ER - TY - JOUR AU - Kumar, S. AU - Nei, M. AU - Dudley, J. AU - Tamura, K. PY - 2008 DA - 2008// TI - MEGA: a biologist-centric software for evolutionary analysis of DNA and protein sequences JO - Briefs Bioinf VL - 9 UR - https://doi.org/10.1093/bib/bbn017 DO - 10.1093/bib/bbn017 ID - Kumar2008 ER - TY - JOUR AU - Felsenstein, J. PY - 1989 DA - 1989// TI - PHYLIP - Phylogeny inference package (version 3.2) JO - Cladistics VL - 5 ID - Felsenstein1989 ER -