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Table 1 Summary statistics of sequencing data and binned Anabaena genomes

From: Structural and functional analysis of the finished genome of the recently isolated toxic Anabaena sp. WA102

Sample

Sample

Library prep/

Seq

Anabaena sp. genome

 

date

Seq platform

output

 
   

(Gbp)

 
    

N50

Mean

No.

Max

Total

Unique

     

cov.

contigs

contig

length

core

       

(nt)

(nt)

genes

Anabaena

Dec

Blue

 

sp. WA102

2014

Pippin/

1.13

5,715,573

50x

3*

5,705,437

5,807,452

104

culture

 

PacBio

 

est. from

Dec

TruSeq/

 

Anderson

2013

HiSeq2000

3.83

15,892

129x

819

66,878

5,698,213

105

Lake

 

100bp PE

 

May 2013

 

WA25

July

TruSeq/

 

Shotgun

   
 

2012/

HiSeq2000

30.1

metagenome

 
 

Anderson

100bp PE

 

of surface

-

-

-

-

-

 

Lake

  

lake water

     

Anabaena

 

sp. AL93

 

culture

Jan

Nextera/

 

est. from

2013

MiSeq

1.36

46,264

149x

314

133,848

5,757,055

105

American

 

250bp PE

 

Lake

 

1993

    
  1. PE indicates paired-end reads. *Three contigs include the chromosome, plasmid, and the contig representing the insertion variant with the xseA gene
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BMC Genomics

ISSN: 1471-2164

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