(A) Gene clusters from FT, MT, SC, GC, PGC data sets and DMR cluster data sets | |||||||
 | Number of Sites | Total Clusters | Gene in Cluster | Data Type |  |  |  |
 Female Tissue (FT) | 1052 | 28 | 221 | Differential Gene Expression |  |  |  |
 Male Tissue (MT) | 2763 | 41 | 727 | Differential Gene Expression |  |  |  |
 Sertoli Cell (SC) | 430 | 24 | 101 | Differential Gene Expression |  |  |  |
 Granulosa Cell (GC) | 479 | 22 | 111 | Differential Gene Expression |  |  |  |
 Primordial Germ Cell (PGC) | 739 | 15 | 138 | Differential Gene Expression |  |  |  |
 DMR | 776 | 21 | 194 | Differential DNA Methylation |  |  |  |
 Background (BKG) | 20917 | 59 | 7132 | Locations of All Genes |  |  |  |
(B) Overlap of gene and DMR clusters between FT, MT, SC, GC, PGC, and DMR and background (BKG) | |||||||
 | FT(28) | MT(41) | SC(24) | GC(22) | PGC(15) | DMR(21) | BKG(59) |
 FT(28) | 28 | 14 | 8 | 8 | 2 | 5 | 18 |
 MT(41) | 14 | 41 | 13 | 14 | 6 | 11 | 31 |
 SC(24) | 8 | 13 | 24 | 4 | 4 | 2 | 15 |
 GC(22) | 8 | 14 | 4 | 22 | 5 | 4 | 17 |
 PGC(15) | 2 | 6 | 4 | 5 | 15 | 2 | 14 |
 DMR(21) | 5 | 11 | 2 | 4 | 2 | 21 | 15 |
 BKG(59) | 18 | 31 | 15 | 17 | 14 | 15 | 59 |
(C) Clusters overlap among datasets after removal of background gene clusters | |||||||
 | FT(12) | MT(11) | SC(9) | GC(5) | PGC(2) | DMR(7) |  |
 FT(12) | 12 | 1 | 0 | 0 | 0 | 0 |  |
 MT(11) | 1 | 11 | 0 | 1 | 1 | 1 |  |
 SC(9) | 0 | 0 | 9 | 0 | 0 | 0 |  |
 GC(5) | 0 | 1 | 0 | 5 | 0 | 0 |  |
 PGC(2) | 0 | 1 | 0 | 0 | 2 | 0 |  |
 DMR(7) | 0 | 1 | 0 | 0 | 0 | 7 |  |