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Table 1 Gene and DMR cluster overlap

From: Genomic Clustering of differential DNA methylated regions (epimutations) associated with the epigenetic transgenerational inheritance of disease and phenotypic variation

(A) Gene clusters from FT, MT, SC, GC, PGC data sets and DMR cluster data sets
  Number of Sites Total Clusters Gene in Cluster Data Type    
 Female Tissue (FT) 1052 28 221 Differential Gene Expression    
 Male Tissue (MT) 2763 41 727 Differential Gene Expression    
 Sertoli Cell (SC) 430 24 101 Differential Gene Expression    
 Granulosa Cell (GC) 479 22 111 Differential Gene Expression    
 Primordial Germ Cell (PGC) 739 15 138 Differential Gene Expression    
 DMR 776 21 194 Differential DNA Methylation    
 Background (BKG) 20917 59 7132 Locations of All Genes    
(B) Overlap of gene and DMR clusters between FT, MT, SC, GC, PGC, and DMR and background (BKG)
  FT(28) MT(41) SC(24) GC(22) PGC(15) DMR(21) BKG(59)
 FT(28) 28 14 8 8 2 5 18
 MT(41) 14 41 13 14 6 11 31
 SC(24) 8 13 24 4 4 2 15
 GC(22) 8 14 4 22 5 4 17
 PGC(15) 2 6 4 5 15 2 14
 DMR(21) 5 11 2 4 2 21 15
 BKG(59) 18 31 15 17 14 15 59
(C) Clusters overlap among datasets after removal of background gene clusters
  FT(12) MT(11) SC(9) GC(5) PGC(2) DMR(7)  
 FT(12) 12 1 0 0 0 0  
 MT(11) 1 11 0 1 1 1  
 SC(9) 0 0 9 0 0 0  
 GC(5) 0 1 0 5 0 0  
 PGC(2) 0 1 0 0 2 0  
 DMR(7) 0 1 0 0 0 7  
  1. (A) Gene clusters from FT, MT, SC, GC, PGC, BKG, as well as DMR clusters. The total number of clusters in each of these datasets, and total number of genes or DMR in these clusters. (B) The overlap in number of sites among these clusters. (C) The unique clustering for each dataset after removal of the gene cluster background